miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18433 3' -64.6 NC_004681.1 + 43918 0.66 0.339779
Target:  5'- --aCGCUggUGCCGUAGCGGgGGUGGgCg -3'
miRNA:   3'- cuaGCGG--GCGGUGUCGCCgCCGCCgG- -5'
18433 3' -64.6 NC_004681.1 + 13129 0.66 0.339779
Target:  5'- --cUGCCCGCCACcgcccuucGUGGCacGGCGGgUa -3'
miRNA:   3'- cuaGCGGGCGGUGu-------CGCCG--CCGCCgG- -5'
18433 3' -64.6 NC_004681.1 + 60196 0.66 0.36218
Target:  5'- uGAUCGgcaCCCGCCGC-GCGGggaucacgccuagUGGCGGaCUu -3'
miRNA:   3'- -CUAGC---GGGCGGUGuCGCC-------------GCCGCC-GG- -5'
18433 3' -64.6 NC_004681.1 + 61200 0.66 0.335271
Target:  5'- ---gGCCUGCCcaccuugggugaaccGCAGCucggGGuCGGCGGUCa -3'
miRNA:   3'- cuagCGGGCGG---------------UGUCG----CC-GCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 47046 0.66 0.355119
Target:  5'- cAUCGCCuUGUCGCc-CGaGuCGGCGGCCu -3'
miRNA:   3'- cUAGCGG-GCGGUGucGC-C-GCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 61397 0.66 0.339779
Target:  5'- aGGUCGgCgGCaACAGCaacGGgGGCGGCa -3'
miRNA:   3'- -CUAGCgGgCGgUGUCG---CCgCCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 5194 0.66 0.36297
Target:  5'- --gCGCCCGCCAUGGCcGaGCuGUcGCCa -3'
miRNA:   3'- cuaGCGGGCGGUGUCG-C-CGcCGcCGG- -5'
18433 3' -64.6 NC_004681.1 + 1361 0.66 0.36297
Target:  5'- --aUGUUCGCCGuguuCuGCgaGGCGGUGGCCa -3'
miRNA:   3'- cuaGCGGGCGGU----GuCG--CCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 32632 0.66 0.355119
Target:  5'- --aCGUUCGCCACacucucuucacGGUGGCGGggaccugGGCCg -3'
miRNA:   3'- cuaGCGGGCGGUG-----------UCGCCGCCg------CCGG- -5'
18433 3' -64.6 NC_004681.1 + 27342 0.66 0.355119
Target:  5'- uGUCGCCCGUgAgauUGGUGGUGuucaCGGCCa -3'
miRNA:   3'- cUAGCGGGCGgU---GUCGCCGCc---GCCGG- -5'
18433 3' -64.6 NC_004681.1 + 50866 0.66 0.358245
Target:  5'- -cUCGCUugugaGCCAgGGUGGCGGCucggacuugcucgauGGUCa -3'
miRNA:   3'- cuAGCGGg----CGGUgUCGCCGCCG---------------CCGG- -5'
18433 3' -64.6 NC_004681.1 + 22907 0.66 0.346622
Target:  5'- gGGUCGCCCcggcgauGCCGUAGUaGCGGCccacgacaGGCCc -3'
miRNA:   3'- -CUAGCGGG-------CGGUGUCGcCGCCG--------CCGG- -5'
18433 3' -64.6 NC_004681.1 + 17888 0.66 0.332291
Target:  5'- aGAagGaaUuCCugGGCGGCGGCGGCg -3'
miRNA:   3'- -CUagCggGcGGugUCGCCGCCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 60313 0.66 0.355119
Target:  5'- ---aGUCCGCCACuaGGCGugauccccgcGCGGCGgguGCCg -3'
miRNA:   3'- cuagCGGGCGGUG--UCGC----------CGCCGC---CGG- -5'
18433 3' -64.6 NC_004681.1 + 52111 0.67 0.296681
Target:  5'- cAUUGCgCacaucucCCGCAGCcucaaGGUGGCGGCCa -3'
miRNA:   3'- cUAGCGgGc------GGUGUCG-----CCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 47176 0.67 0.303559
Target:  5'- -cUCGa-CGCCAaGGUGGUGGCGGgCa -3'
miRNA:   3'- cuAGCggGCGGUgUCGCCGCCGCCgG- -5'
18433 3' -64.6 NC_004681.1 + 39335 0.67 0.28329
Target:  5'- --gCGCCCuuGCCGCGGCGcaCGGUGaGCUg -3'
miRNA:   3'- cuaGCGGG--CGGUGUCGCc-GCCGC-CGG- -5'
18433 3' -64.6 NC_004681.1 + 67051 0.67 0.28329
Target:  5'- uGUCGCCUucgaGCU-CGGCGcGCGGCaccagGGCCg -3'
miRNA:   3'- cUAGCGGG----CGGuGUCGC-CGCCG-----CCGG- -5'
18433 3' -64.6 NC_004681.1 + 5916 0.67 0.296681
Target:  5'- --gCGCUucucgUGCCGCAGUaccaGGUuggGGCGGCCa -3'
miRNA:   3'- cuaGCGG-----GCGGUGUCG----CCG---CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 30675 0.67 0.316963
Target:  5'- cGGUCaaGCUCGCCuuccaucACGGCccuGGUGGCGGUg -3'
miRNA:   3'- -CUAG--CGGGCGG-------UGUCG---CCGCCGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.