miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18433 3' -64.6 NC_004681.1 + 41678 0.68 0.251316
Target:  5'- cAUCGCCgugCGCUGCcugcggGGUGGCgcugcauGGCGGCCg -3'
miRNA:   3'- cUAGCGG---GCGGUG------UCGCCG-------CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 18370 0.68 0.257952
Target:  5'- --gCGCCauCGaCAUGGCaggccaGGCGGCGGCCg -3'
miRNA:   3'- cuaGCGG--GCgGUGUCG------CCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 26449 0.68 0.257952
Target:  5'- -uUCGCgCCGCCAgAGUacGGCuaCGGCCu -3'
miRNA:   3'- cuAGCG-GGCGGUgUCG--CCGccGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 18327 0.68 0.264108
Target:  5'- ---gGUUCGUC-CGGUGGCGGUGGCg -3'
miRNA:   3'- cuagCGGGCGGuGUCGCCGCCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 57804 0.68 0.250125
Target:  5'- --gCGCCgCGCCGCcgagguggcgaaggAGCGG-GGCuGGCCc -3'
miRNA:   3'- cuaGCGG-GCGGUG--------------UCGCCgCCG-CCGG- -5'
18433 3' -64.6 NC_004681.1 + 28050 0.68 0.264108
Target:  5'- --gCGCUgGCgGucgaGGCGGUGGCGGCa -3'
miRNA:   3'- cuaGCGGgCGgUg---UCGCCGCCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 32225 0.68 0.264108
Target:  5'- ---gGCCa-UCGCAGCGGCaGcGCGGCCu -3'
miRNA:   3'- cuagCGGgcGGUGUCGCCG-C-CGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 27752 0.68 0.270382
Target:  5'- -uUCGgugaCgCGCgGCAGCGGCGGCaGCg -3'
miRNA:   3'- cuAGCg---G-GCGgUGUCGCCGCCGcCGg -5'
18433 3' -64.6 NC_004681.1 + 61355 0.68 0.270382
Target:  5'- aGAUCgGCCCGUCGCuGCGGUGGgCaacaGCUc -3'
miRNA:   3'- -CUAG-CGGGCGGUGuCGCCGCC-Gc---CGG- -5'
18433 3' -64.6 NC_004681.1 + 12485 0.68 0.245992
Target:  5'- ---aGCgUCGCCGCGGUGGUGGU-GCCa -3'
miRNA:   3'- cuagCG-GGCGGUGUCGCCGCCGcCGG- -5'
18433 3' -64.6 NC_004681.1 + 20655 0.69 0.240187
Target:  5'- ---aGCgCCGCCAUuuguGCGGCGGuuGCUg -3'
miRNA:   3'- cuagCG-GGCGGUGu---CGCCGCCgcCGG- -5'
18433 3' -64.6 NC_004681.1 + 51839 0.69 0.223455
Target:  5'- -cUUGCCCGCgC-CGG-GGCGGCcGCCg -3'
miRNA:   3'- cuAGCGGGCG-GuGUCgCCGCCGcCGG- -5'
18433 3' -64.6 NC_004681.1 + 16105 0.69 0.233934
Target:  5'- gGcgCGCacagCCGCCACGGCugugucggguaucGGCuucgcggcgcuGGCGGCCa -3'
miRNA:   3'- -CuaGCG----GGCGGUGUCG-------------CCG-----------CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 7998 0.69 0.212859
Target:  5'- -cUCGgCgGCUuccucggaGGCGGCGGCGGUCu -3'
miRNA:   3'- cuAGCgGgCGGug------UCGCCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 14470 0.69 0.239613
Target:  5'- --gCGCgCGCCGCcuccgccgagcagGGCGcGCuGGUGGCCg -3'
miRNA:   3'- cuaGCGgGCGGUG-------------UCGC-CG-CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 64921 0.69 0.240187
Target:  5'- --gCGCCCGCCugGaGCacgaGGUGGCGacgcGCCu -3'
miRNA:   3'- cuaGCGGGCGGugU-CG----CCGCCGC----CGG- -5'
18433 3' -64.6 NC_004681.1 + 60662 0.69 0.240187
Target:  5'- -uUCGUCgGCCAgCGGCccgaGGCGuGCGGCg -3'
miRNA:   3'- cuAGCGGgCGGU-GUCG----CCGC-CGCCGg -5'
18433 3' -64.6 NC_004681.1 + 31577 0.69 0.234496
Target:  5'- --aUGCCaagCGCCGCAGCGaauugcguuGCGGUcaGGCCg -3'
miRNA:   3'- cuaGCGG---GCGGUGUCGC---------CGCCG--CCGG- -5'
18433 3' -64.6 NC_004681.1 + 16214 0.69 0.234496
Target:  5'- cGAUa-CCCGaCACAGCcGUGGCGGCUn -3'
miRNA:   3'- -CUAgcGGGCgGUGUCGcCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 14654 0.69 0.218102
Target:  5'- --gCGgCCGUgGUGGCGGUGGCGGCg -3'
miRNA:   3'- cuaGCgGGCGgUGUCGCCGCCGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.