miRNA display CGI


Results 61 - 80 of 106 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18433 3' -64.6 NC_004681.1 + 60662 0.69 0.240187
Target:  5'- -uUCGUCgGCCAgCGGCccgaGGCGuGCGGCg -3'
miRNA:   3'- cuAGCGGgCGGU-GUCG----CCGC-CGCCGg -5'
18433 3' -64.6 NC_004681.1 + 20655 0.69 0.240187
Target:  5'- ---aGCgCCGCCAUuuguGCGGCGGuuGCUg -3'
miRNA:   3'- cuagCG-GGCGGUGu---CGCCGCCgcCGG- -5'
18433 3' -64.6 NC_004681.1 + 45581 0.69 0.216518
Target:  5'- cAUCGCCCGCaa-GGUGGCcGGUgccuccuccgcgucGGCCa -3'
miRNA:   3'- cUAGCGGGCGgugUCGCCG-CCG--------------CCGG- -5'
18433 3' -64.6 NC_004681.1 + 35047 0.69 0.218102
Target:  5'- -cUUGCUCGCCGCGGaCGGCaaccacaguGGCaGGCUc -3'
miRNA:   3'- cuAGCGGGCGGUGUC-GCCG---------CCG-CCGG- -5'
18433 3' -64.6 NC_004681.1 + 62955 0.69 0.22892
Target:  5'- -uUCGgCgGUgGUGGCGGCGGCGGCg -3'
miRNA:   3'- cuAGCgGgCGgUGUCGCCGCCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 59177 0.69 0.22892
Target:  5'- cGUCGCCaccuauGUCACGGaCGGCcucccgGGCGGCUc -3'
miRNA:   3'- cUAGCGGg-----CGGUGUC-GCCG------CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 16105 0.69 0.233934
Target:  5'- gGcgCGCacagCCGCCACGGCugugucggguaucGGCuucgcggcgcuGGCGGCCa -3'
miRNA:   3'- -CuaGCG----GGCGGUGUCG-------------CCG-----------CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 64921 0.69 0.240187
Target:  5'- --gCGCCCGCCugGaGCacgaGGUGGCGacgcGCCu -3'
miRNA:   3'- cuaGCGGGCGGugU-CG----CCGCCGC----CGG- -5'
18433 3' -64.6 NC_004681.1 + 14470 0.69 0.239613
Target:  5'- --gCGCgCGCCGCcuccgccgagcagGGCGcGCuGGUGGCCg -3'
miRNA:   3'- cuaGCGgGCGGUG-------------UCGC-CG-CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 49435 0.7 0.188247
Target:  5'- --gCGCCCGCgGCGccgccGUGGCGGaCGGUg -3'
miRNA:   3'- cuaGCGGGCGgUGU-----CGCCGCC-GCCGg -5'
18433 3' -64.6 NC_004681.1 + 28127 0.7 0.179123
Target:  5'- ---gGcCCCGCgggcaACGGCGGCGGCGGaUCg -3'
miRNA:   3'- cuagC-GGGCGg----UGUCGCCGCCGCC-GG- -5'
18433 3' -64.6 NC_004681.1 + 70452 0.7 0.188247
Target:  5'- cAUC-UCCGCCAUGGUGGUccuGCGGCCg -3'
miRNA:   3'- cUAGcGGGCGGUGUCGCCGc--CGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 16345 0.7 0.197777
Target:  5'- cAUC-UCCGCUGCGGCGGUGGgUGGCg -3'
miRNA:   3'- cUAGcGGGCGGUGUCGCCGCC-GCCGg -5'
18433 3' -64.6 NC_004681.1 + 44929 0.7 0.202698
Target:  5'- -cUCGCCC-CCAC-GCGGUGGa-GCCg -3'
miRNA:   3'- cuAGCGGGcGGUGuCGCCGCCgcCGG- -5'
18433 3' -64.6 NC_004681.1 + 16188 0.7 0.179123
Target:  5'- --gUGCgCGCCGCGGUGGUgacgccaccgagGGCGGCa -3'
miRNA:   3'- cuaGCGgGCGGUGUCGCCG------------CCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 14576 0.7 0.183635
Target:  5'- aGcgCGCCCuGCU-CGGCGGaGGCGGCg -3'
miRNA:   3'- -CuaGCGGG-CGGuGUCGCCgCCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 9204 0.7 0.183635
Target:  5'- --aCGCCagaGCCcgagcCAGCGGCGccggugacgacGCGGCCa -3'
miRNA:   3'- cuaGCGGg--CGGu----GUCGCCGC-----------CGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 26967 0.7 0.188247
Target:  5'- -cUCG-CCGCCAUAgGUGGCGGUGGggaCCg -3'
miRNA:   3'- cuAGCgGGCGGUGU-CGCCGCCGCC---GG- -5'
18433 3' -64.6 NC_004681.1 + 24980 0.7 0.19296
Target:  5'- gGGUCGCCgcccuCGCCAUuGCuGGUgagggagccuuGGCGGCCg -3'
miRNA:   3'- -CUAGCGG-----GCGGUGuCG-CCG-----------CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 42353 0.7 0.188247
Target:  5'- --gCGCCUuCCGCgGGCGGgaccagcagcuCGGCGGCCg -3'
miRNA:   3'- cuaGCGGGcGGUG-UCGCC-----------GCCGCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.