Results 21 - 40 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18433 | 3' | -64.6 | NC_004681.1 | + | 41928 | 0.71 | 0.150217 |
Target: 5'- aGAUCgGCCCGCUGCAGggaaaugcccCGGgaGGCGGCg -3' miRNA: 3'- -CUAG-CGGGCGGUGUC----------GCCg-CCGCCGg -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 61769 | 0.71 | 0.170394 |
Target: 5'- -cUCGgCgGCgGCcuccGCGGCGGCGGCUu -3' miRNA: 3'- cuAGCgGgCGgUGu---CGCCGCCGCCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 3126 | 0.71 | 0.17471 |
Target: 5'- gGAUCGCgCGCC-CAGCGGCucGCccuccuccagGGCCu -3' miRNA: 3'- -CUAGCGgGCGGuGUCGCCGc-CG----------CCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 24980 | 0.7 | 0.19296 |
Target: 5'- gGGUCGCCgcccuCGCCAUuGCuGGUgagggagccuuGGCGGCCg -3' miRNA: 3'- -CUAGCGG-----GCGGUGuCG-CCG-----------CCGCCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 16188 | 0.7 | 0.179123 |
Target: 5'- --gUGCgCGCCGCGGUGGUgacgccaccgagGGCGGCa -3' miRNA: 3'- cuaGCGgGCGGUGUCGCCG------------CCGCCGg -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 26967 | 0.7 | 0.188247 |
Target: 5'- -cUCG-CCGCCAUAgGUGGCGGUGGggaCCg -3' miRNA: 3'- cuAGCgGGCGGUGU-CGCCGCCGCC---GG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 9204 | 0.7 | 0.183635 |
Target: 5'- --aCGCCagaGCCcgagcCAGCGGCGccggugacgacGCGGCCa -3' miRNA: 3'- cuaGCGGg--CGGu----GUCGCCGC-----------CGCCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 14576 | 0.7 | 0.183635 |
Target: 5'- aGcgCGCCCuGCU-CGGCGGaGGCGGCg -3' miRNA: 3'- -CuaGCGGG-CGGuGUCGCCgCCGCCGg -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 69023 | 0.7 | 0.183635 |
Target: 5'- -cUCGaa-GUCuuCGGUGGCGGCGGCCg -3' miRNA: 3'- cuAGCgggCGGu-GUCGCCGCCGCCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 28127 | 0.7 | 0.179123 |
Target: 5'- ---gGcCCCGCgggcaACGGCGGCGGCGGaUCg -3' miRNA: 3'- cuagC-GGGCGg----UGUCGCCGCCGCC-GG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 70452 | 0.7 | 0.188247 |
Target: 5'- cAUC-UCCGCCAUGGUGGUccuGCGGCCg -3' miRNA: 3'- cUAGcGGGCGGUGUCGCCGc--CGCCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 16345 | 0.7 | 0.197777 |
Target: 5'- cAUC-UCCGCUGCGGCGGUGGgUGGCg -3' miRNA: 3'- cUAGcGGGCGGUGUCGCCGCC-GCCGg -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 44929 | 0.7 | 0.202698 |
Target: 5'- -cUCGCCC-CCAC-GCGGUGGa-GCCg -3' miRNA: 3'- cuAGCGGGcGGUGuCGCCGCCgcCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 42353 | 0.7 | 0.188247 |
Target: 5'- --gCGCCUuCCGCgGGCGGgaccagcagcuCGGCGGCCg -3' miRNA: 3'- cuaGCGGGcGGUG-UCGCC-----------GCCGCCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 65714 | 0.7 | 0.202698 |
Target: 5'- -cUCGCCaCGCCACuuGGCGGCGaagcagagaacGCGaGUCg -3' miRNA: 3'- cuAGCGG-GCGGUG--UCGCCGC-----------CGC-CGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 37392 | 0.7 | 0.19296 |
Target: 5'- --aUGCCCGCgGCcuucuuGGCGGCGaCGGUCa -3' miRNA: 3'- cuaGCGGGCGgUG------UCGCCGCcGCCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 49435 | 0.7 | 0.188247 |
Target: 5'- --gCGCCCGCgGCGccgccGUGGCGGaCGGUg -3' miRNA: 3'- cuaGCGGGCGgUGU-----CGCCGCC-GCCGg -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 45581 | 0.69 | 0.216518 |
Target: 5'- cAUCGCCCGCaa-GGUGGCcGGUgccuccuccgcgucGGCCa -3' miRNA: 3'- cUAGCGGGCGgugUCGCCG-CCG--------------CCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 14470 | 0.69 | 0.239613 |
Target: 5'- --gCGCgCGCCGCcuccgccgagcagGGCGcGCuGGUGGCCg -3' miRNA: 3'- cuaGCGgGCGGUG-------------UCGC-CG-CCGCCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 64921 | 0.69 | 0.240187 |
Target: 5'- --gCGCCCGCCugGaGCacgaGGUGGCGacgcGCCu -3' miRNA: 3'- cuaGCGGGCGGugU-CG----CCGCCGC----CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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