miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18433 3' -64.6 NC_004681.1 + 14470 0.69 0.239613
Target:  5'- --gCGCgCGCCGCcuccgccgagcagGGCGcGCuGGUGGCCg -3'
miRNA:   3'- cuaGCGgGCGGUG-------------UCGC-CG-CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 64921 0.69 0.240187
Target:  5'- --gCGCCCGCCugGaGCacgaGGUGGCGacgcGCCu -3'
miRNA:   3'- cuaGCGGGCGGugU-CG----CCGCCGC----CGG- -5'
18433 3' -64.6 NC_004681.1 + 16105 0.69 0.233934
Target:  5'- gGcgCGCacagCCGCCACGGCugugucggguaucGGCuucgcggcgcuGGCGGCCa -3'
miRNA:   3'- -CuaGCG----GGCGGUGUCG-------------CCG-----------CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 59177 0.69 0.22892
Target:  5'- cGUCGCCaccuauGUCACGGaCGGCcucccgGGCGGCUc -3'
miRNA:   3'- cUAGCGGg-----CGGUGUC-GCCG------CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 62955 0.69 0.22892
Target:  5'- -uUCGgCgGUgGUGGCGGCGGCGGCg -3'
miRNA:   3'- cuAGCgGgCGgUGUCGCCGCCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 45581 0.69 0.216518
Target:  5'- cAUCGCCCGCaa-GGUGGCcGGUgccuccuccgcgucGGCCa -3'
miRNA:   3'- cUAGCGGGCGgugUCGCCG-CCG--------------CCGG- -5'
18433 3' -64.6 NC_004681.1 + 20655 0.69 0.240187
Target:  5'- ---aGCgCCGCCAUuuguGCGGCGGuuGCUg -3'
miRNA:   3'- cuagCG-GGCGGUGu---CGCCGCCgcCGG- -5'
18433 3' -64.6 NC_004681.1 + 21307 0.69 0.211824
Target:  5'- gGGUCuGCuCCGCCAgAGUGGCGacgcuguccauuCGGCCg -3'
miRNA:   3'- -CUAG-CG-GGCGGUgUCGCCGCc-----------GCCGG- -5'
18433 3' -64.6 NC_004681.1 + 2229 0.69 0.212859
Target:  5'- ----aCCUGCCGgguuaccacauCAGCGGgGGUGGCCa -3'
miRNA:   3'- cuagcGGGCGGU-----------GUCGCCgCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 66286 0.69 0.227268
Target:  5'- -cUUGCagCGCCACAucugguacaugcccGCGGUGGUGGCg -3'
miRNA:   3'- cuAGCGg-GCGGUGU--------------CGCCGCCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 51839 0.69 0.223455
Target:  5'- -cUUGCCCGCgC-CGG-GGCGGCcGCCg -3'
miRNA:   3'- cuAGCGGGCG-GuGUCgCCGCCGcCGG- -5'
18433 3' -64.6 NC_004681.1 + 31577 0.69 0.234496
Target:  5'- --aUGCCaagCGCCGCAGCGaauugcguuGCGGUcaGGCCg -3'
miRNA:   3'- cuaGCGG---GCGGUGUCGC---------CGCCG--CCGG- -5'
18433 3' -64.6 NC_004681.1 + 7998 0.69 0.212859
Target:  5'- -cUCGgCgGCUuccucggaGGCGGCGGCGGUCu -3'
miRNA:   3'- cuAGCgGgCGGug------UCGCCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 45044 0.69 0.212859
Target:  5'- ---aGCCCGa-GCucGCGGUGGCGGCUc -3'
miRNA:   3'- cuagCGGGCggUGu-CGCCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 25919 0.69 0.223455
Target:  5'- gGAUUGCCaugagcaCCGCGGUGGCGGUgaauGGCUu -3'
miRNA:   3'- -CUAGCGGgc-----GGUGUCGCCGCCG----CCGG- -5'
18433 3' -64.6 NC_004681.1 + 14654 0.69 0.218102
Target:  5'- --gCGgCCGUgGUGGCGGUGGCGGCg -3'
miRNA:   3'- cuaGCgGGCGgUGUCGCCGCCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 18370 0.68 0.257952
Target:  5'- --gCGCCauCGaCAUGGCaggccaGGCGGCGGCCg -3'
miRNA:   3'- cuaGCGG--GCgGUGUCG------CCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 26449 0.68 0.257952
Target:  5'- -uUCGCgCCGCCAgAGUacGGCuaCGGCCu -3'
miRNA:   3'- cuAGCG-GGCGGUgUCG--CCGccGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 23684 0.68 0.264108
Target:  5'- --gCGCCCGCCuCcGCGGacauaGaGUGGCCc -3'
miRNA:   3'- cuaGCGGGCGGuGuCGCCg----C-CGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 18327 0.68 0.264108
Target:  5'- ---gGUUCGUC-CGGUGGCGGUGGCg -3'
miRNA:   3'- cuagCGGGCGGuGUCGCCGCCGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.