miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18433 3' -64.6 NC_004681.1 + 30239 1.11 0.000153
Target:  5'- aGAUCGCCCGCCACAGCGGCGGCGGCCg -3'
miRNA:   3'- -CUAGCGGGCGGUGUCGCCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 49333 0.81 0.029884
Target:  5'- --cCGUCCGCCACGGCGGCGccGCGGgCg -3'
miRNA:   3'- cuaGCGGGCGGUGUCGCCGC--CGCCgG- -5'
18433 3' -64.6 NC_004681.1 + 26217 0.78 0.04781
Target:  5'- -cUgGCCCGCCACGGCGGCGaugcccgcccccuacGCGGUg -3'
miRNA:   3'- cuAgCGGGCGGUGUCGCCGC---------------CGCCGg -5'
18433 3' -64.6 NC_004681.1 + 13234 0.75 0.08957
Target:  5'- --cCGCCgUGCCACgaagGGCGGUGGCGGgCa -3'
miRNA:   3'- cuaGCGG-GCGGUG----UCGCCGCCGCCgG- -5'
18433 3' -64.6 NC_004681.1 + 17527 0.74 0.091231
Target:  5'- cGUUGCCCGuCCACAuguuggcgccacccGUGG-GGCGGCCg -3'
miRNA:   3'- cUAGCGGGC-GGUGU--------------CGCCgCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 47202 0.74 0.091952
Target:  5'- -cUCG-UCGCU-CAGCGGCGGCGGCUc -3'
miRNA:   3'- cuAGCgGGCGGuGUCGCCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 7446 0.74 0.091952
Target:  5'- gGGagGCuUCGCCGCGGCGGCGG-GGUCa -3'
miRNA:   3'- -CUagCG-GGCGGUGUCGCCGCCgCCGG- -5'
18433 3' -64.6 NC_004681.1 + 27625 0.74 0.102095
Target:  5'- --gCGCUgGCgGCGGCGGCGGCucuGGUCg -3'
miRNA:   3'- cuaGCGGgCGgUGUCGCCGCCG---CCGG- -5'
18433 3' -64.6 NC_004681.1 + 25656 0.74 0.104791
Target:  5'- aGAUCGUggcagaggguaUgGCCACAGgGGCGG-GGCCa -3'
miRNA:   3'- -CUAGCG-----------GgCGGUGUCgCCGCCgCCGG- -5'
18433 3' -64.6 NC_004681.1 + 34848 0.73 0.107275
Target:  5'- -cUUGCCCcCUACuucgacaAGgGGCGGCGGCCg -3'
miRNA:   3'- cuAGCGGGcGGUG-------UCgCCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 60702 0.73 0.110385
Target:  5'- -cUCGUCaaguGCCGCAGCGGCGGCcucGUCg -3'
miRNA:   3'- cuAGCGGg---CGGUGUCGCCGCCGc--CGG- -5'
18433 3' -64.6 NC_004681.1 + 25249 0.73 0.113286
Target:  5'- --gCGCCCGCgGCGGCGGUugGGUGcGCUu -3'
miRNA:   3'- cuaGCGGGCGgUGUCGCCG--CCGC-CGG- -5'
18433 3' -64.6 NC_004681.1 + 69509 0.73 0.125615
Target:  5'- aGGUgCGCCaCGCCgugugcucACuGCuGCGGCGGCCg -3'
miRNA:   3'- -CUA-GCGG-GCGG--------UGuCGcCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 58776 0.72 0.134628
Target:  5'- cGUCcCCCGCCAuCAggcagguguggcccGCGGCgcaGGCGGCCg -3'
miRNA:   3'- cUAGcGGGCGGU-GU--------------CGCCG---CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 24842 0.72 0.139177
Target:  5'- --gCGUCgGCgGC-GCgGGCGGCGGCCg -3'
miRNA:   3'- cuaGCGGgCGgUGuCG-CCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 47374 0.72 0.142772
Target:  5'- aGUCGCCCGCCAacgcgccaCGGCGacGCGGUCc -3'
miRNA:   3'- cUAGCGGGCGGUguc-----GCCGC--CGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 41928 0.71 0.150217
Target:  5'- aGAUCgGCCCGCUGCAGggaaaugcccCGGgaGGCGGCg -3'
miRNA:   3'- -CUAG-CGGGCGGUGUC----------GCCg-CCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 18728 0.71 0.150217
Target:  5'- cAUCGCCaaggGCgACGGCGGCGa-GGCCg -3'
miRNA:   3'- cUAGCGGg---CGgUGUCGCCGCcgCCGG- -5'
18433 3' -64.6 NC_004681.1 + 16448 0.71 0.158013
Target:  5'- cGUCGCcacccaCCGCCGCAGCGGaGaUGGCCu -3'
miRNA:   3'- cUAGCG------GGCGGUGUCGCCgCcGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 35790 0.71 0.170394
Target:  5'- -uUCGUCCGacuCCAUuGCGGgGcGCGGCCa -3'
miRNA:   3'- cuAGCGGGC---GGUGuCGCCgC-CGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.