miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18433 3' -64.6 NC_004681.1 + 14397 0.71 0.170394
Target:  5'- cAUCGCCgaCGCCA-AGCGcaaGCaGGCGGCCg -3'
miRNA:   3'- cUAGCGG--GCGGUgUCGC---CG-CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 61769 0.71 0.170394
Target:  5'- -cUCGgCgGCgGCcuccGCGGCGGCGGCUu -3'
miRNA:   3'- cuAGCgGgCGgUGu---CGCCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 3126 0.71 0.17471
Target:  5'- gGAUCGCgCGCC-CAGCGGCucGCccuccuccagGGCCu -3'
miRNA:   3'- -CUAGCGgGCGGuGUCGCCGc-CG----------CCGG- -5'
18433 3' -64.6 NC_004681.1 + 28127 0.7 0.179123
Target:  5'- ---gGcCCCGCgggcaACGGCGGCGGCGGaUCg -3'
miRNA:   3'- cuagC-GGGCGg----UGUCGCCGCCGCC-GG- -5'
18433 3' -64.6 NC_004681.1 + 16188 0.7 0.179123
Target:  5'- --gUGCgCGCCGCGGUGGUgacgccaccgagGGCGGCa -3'
miRNA:   3'- cuaGCGgGCGGUGUCGCCG------------CCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 9204 0.7 0.183635
Target:  5'- --aCGCCagaGCCcgagcCAGCGGCGccggugacgacGCGGCCa -3'
miRNA:   3'- cuaGCGGg--CGGu----GUCGCCGC-----------CGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 14576 0.7 0.183635
Target:  5'- aGcgCGCCCuGCU-CGGCGGaGGCGGCg -3'
miRNA:   3'- -CuaGCGGG-CGGuGUCGCCgCCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 69023 0.7 0.183635
Target:  5'- -cUCGaa-GUCuuCGGUGGCGGCGGCCg -3'
miRNA:   3'- cuAGCgggCGGu-GUCGCCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 70452 0.7 0.188247
Target:  5'- cAUC-UCCGCCAUGGUGGUccuGCGGCCg -3'
miRNA:   3'- cUAGcGGGCGGUGUCGCCGc--CGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 49435 0.7 0.188247
Target:  5'- --gCGCCCGCgGCGccgccGUGGCGGaCGGUg -3'
miRNA:   3'- cuaGCGGGCGgUGU-----CGCCGCC-GCCGg -5'
18433 3' -64.6 NC_004681.1 + 26967 0.7 0.188247
Target:  5'- -cUCG-CCGCCAUAgGUGGCGGUGGggaCCg -3'
miRNA:   3'- cuAGCgGGCGGUGU-CGCCGCCGCC---GG- -5'
18433 3' -64.6 NC_004681.1 + 42353 0.7 0.188247
Target:  5'- --gCGCCUuCCGCgGGCGGgaccagcagcuCGGCGGCCg -3'
miRNA:   3'- cuaGCGGGcGGUG-UCGCC-----------GCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 24980 0.7 0.19296
Target:  5'- gGGUCGCCgcccuCGCCAUuGCuGGUgagggagccuuGGCGGCCg -3'
miRNA:   3'- -CUAGCGG-----GCGGUGuCG-CCG-----------CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 37392 0.7 0.19296
Target:  5'- --aUGCCCGCgGCcuucuuGGCGGCGaCGGUCa -3'
miRNA:   3'- cuaGCGGGCGgUG------UCGCCGCcGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 16345 0.7 0.197777
Target:  5'- cAUC-UCCGCUGCGGCGGUGGgUGGCg -3'
miRNA:   3'- cUAGcGGGCGGUGUCGCCGCC-GCCGg -5'
18433 3' -64.6 NC_004681.1 + 65714 0.7 0.202698
Target:  5'- -cUCGCCaCGCCACuuGGCGGCGaagcagagaacGCGaGUCg -3'
miRNA:   3'- cuAGCGG-GCGGUG--UCGCCGC-----------CGC-CGG- -5'
18433 3' -64.6 NC_004681.1 + 44929 0.7 0.202698
Target:  5'- -cUCGCCC-CCAC-GCGGUGGa-GCCg -3'
miRNA:   3'- cuAGCGGGcGGUGuCGCCGCCgcCGG- -5'
18433 3' -64.6 NC_004681.1 + 21307 0.69 0.211824
Target:  5'- gGGUCuGCuCCGCCAgAGUGGCGacgcuguccauuCGGCCg -3'
miRNA:   3'- -CUAG-CG-GGCGGUgUCGCCGCc-----------GCCGG- -5'
18433 3' -64.6 NC_004681.1 + 45044 0.69 0.212859
Target:  5'- ---aGCCCGa-GCucGCGGUGGCGGCUc -3'
miRNA:   3'- cuagCGGGCggUGu-CGCCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 7998 0.69 0.212859
Target:  5'- -cUCGgCgGCUuccucggaGGCGGCGGCGGUCu -3'
miRNA:   3'- cuAGCgGgCGGug------UCGCCGCCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.