Results 61 - 80 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18433 | 3' | -64.6 | NC_004681.1 | + | 41678 | 0.68 | 0.251316 |
Target: 5'- cAUCGCCgugCGCUGCcugcggGGUGGCgcugcauGGCGGCCg -3' miRNA: 3'- cUAGCGG---GCGGUG------UCGCCG-------CCGCCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 30342 | 0.68 | 0.251913 |
Target: 5'- --cCGgCCGCCGCcGCuGUGGCGGgCg -3' miRNA: 3'- cuaGCgGGCGGUGuCGcCGCCGCCgG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 27664 | 0.68 | 0.251913 |
Target: 5'- --cCGguuaCCGaUACGGCGGCGGCGGUg -3' miRNA: 3'- cuaGCg---GGCgGUGUCGCCGCCGCCGg -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 18370 | 0.68 | 0.257952 |
Target: 5'- --gCGCCauCGaCAUGGCaggccaGGCGGCGGCCg -3' miRNA: 3'- cuaGCGG--GCgGUGUCG------CCGCCGCCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 26449 | 0.68 | 0.257952 |
Target: 5'- -uUCGCgCCGCCAgAGUacGGCuaCGGCCu -3' miRNA: 3'- cuAGCG-GGCGGUgUCG--CCGccGCCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 23684 | 0.68 | 0.264108 |
Target: 5'- --gCGCCCGCCuCcGCGGacauaGaGUGGCCc -3' miRNA: 3'- cuaGCGGGCGGuGuCGCCg----C-CGCCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 18327 | 0.68 | 0.264108 |
Target: 5'- ---gGUUCGUC-CGGUGGCGGUGGCg -3' miRNA: 3'- cuagCGGGCGGuGUCGCCGCCGCCGg -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 28050 | 0.68 | 0.264108 |
Target: 5'- --gCGCUgGCgGucgaGGCGGUGGCGGCa -3' miRNA: 3'- cuaGCGGgCGgUg---UCGCCGCCGCCGg -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 32225 | 0.68 | 0.264108 |
Target: 5'- ---gGCCa-UCGCAGCGGCaGcGCGGCCu -3' miRNA: 3'- cuagCGGgcGGUGUCGCCG-C-CGCCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 45374 | 0.68 | 0.264108 |
Target: 5'- -uUCGCCgGUCACgGGCGG-GGCGuCCg -3' miRNA: 3'- cuAGCGGgCGGUG-UCGCCgCCGCcGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 61270 | 0.68 | 0.270382 |
Target: 5'- cGUCGCCgucgacccaguUGcCCugGGCGucGCGGCGGCg -3' miRNA: 3'- cUAGCGG-----------GC-GGugUCGC--CGCCGCCGg -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 27752 | 0.68 | 0.270382 |
Target: 5'- -uUCGgugaCgCGCgGCAGCGGCGGCaGCg -3' miRNA: 3'- cuAGCg---G-GCGgUGUCGCCGCCGcCGg -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 61355 | 0.68 | 0.270382 |
Target: 5'- aGAUCgGCCCGUCGCuGCGGUGGgCaacaGCUc -3' miRNA: 3'- -CUAG-CGGGCGGUGuCGCCGCC-Gc---CGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 40255 | 0.68 | 0.276776 |
Target: 5'- cAUCGCCuCGau-CuGCGGCGucGCGGCCu -3' miRNA: 3'- cUAGCGG-GCgguGuCGCCGC--CGCCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 67051 | 0.67 | 0.28329 |
Target: 5'- uGUCGCCUucgaGCU-CGGCGcGCGGCaccagGGCCg -3' miRNA: 3'- cUAGCGGG----CGGuGUCGC-CGCCG-----CCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 39335 | 0.67 | 0.28329 |
Target: 5'- --gCGCCCuuGCCGCGGCGcaCGGUGaGCUg -3' miRNA: 3'- cuaGCGGG--CGGUGUCGCc-GCCGC-CGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 883 | 0.67 | 0.296681 |
Target: 5'- gGAUCGCCagcacuuccuucUGCCACcccgucaugGGCGGCaG-GGCCg -3' miRNA: 3'- -CUAGCGG------------GCGGUG---------UCGCCGcCgCCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 5916 | 0.67 | 0.296681 |
Target: 5'- --gCGCUucucgUGCCGCAGUaccaGGUuggGGCGGCCa -3' miRNA: 3'- cuaGCGG-----GCGGUGUCG----CCG---CCGCCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 5769 | 0.67 | 0.296681 |
Target: 5'- -cUCGCgcaaCGCCACcGCGGCGauguggaagaacGCuGGCCg -3' miRNA: 3'- cuAGCGg---GCGGUGuCGCCGC------------CG-CCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 52111 | 0.67 | 0.296681 |
Target: 5'- cAUUGCgCacaucucCCGCAGCcucaaGGUGGCGGCCa -3' miRNA: 3'- cUAGCGgGc------GGUGUCG-----CCGCCGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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