Results 81 - 100 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18433 | 3' | -64.6 | NC_004681.1 | + | 47176 | 0.67 | 0.303559 |
Target: 5'- -cUCGa-CGCCAaGGUGGUGGCGGgCa -3' miRNA: 3'- cuAGCggGCGGUgUCGCCGCCGCCgG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 61749 | 0.67 | 0.303559 |
Target: 5'- -cUCGCgCGCCAcCAGaCcGCGGCcGCCa -3' miRNA: 3'- cuAGCGgGCGGU-GUC-GcCGCCGcCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 18317 | 0.67 | 0.310559 |
Target: 5'- aGUCuGCCCGCC-CGGUacacccGGgGGUGcGCCg -3' miRNA: 3'- cUAG-CGGGCGGuGUCG------CCgCCGC-CGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 6295 | 0.67 | 0.310559 |
Target: 5'- aGAUCauggGCCUGCCGCGGuCGGauGacccgaaGGCCg -3' miRNA: 3'- -CUAG----CGGGCGGUGUC-GCCgcCg------CCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 30675 | 0.67 | 0.316963 |
Target: 5'- cGGUCaaGCUCGCCuuccaucACGGCccuGGUGGCGGUg -3' miRNA: 3'- -CUAG--CGGGCGG-------UGUCG---CCGCCGCCGg -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 57902 | 0.67 | 0.317681 |
Target: 5'- -uUCGCCa-CCuCGGCGGCG-CGGCg -3' miRNA: 3'- cuAGCGGgcGGuGUCGCCGCcGCCGg -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 44680 | 0.67 | 0.317681 |
Target: 5'- --gCGgCgGCCGCgAGC-GCGGCGGCg -3' miRNA: 3'- cuaGCgGgCGGUG-UCGcCGCCGCCGg -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 53217 | 0.67 | 0.322738 |
Target: 5'- cAUCGCCU-CCGCuagcucaggugucgAGUGGCaccugcaccaGGCGGCCa -3' miRNA: 3'- cUAGCGGGcGGUG--------------UCGCCG----------CCGCCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 2016 | 0.67 | 0.324195 |
Target: 5'- --cCGgCCGCgGCcaGGUGGUcguggagGGCGGCCg -3' miRNA: 3'- cuaGCgGGCGgUG--UCGCCG-------CCGCCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 30027 | 0.67 | 0.324924 |
Target: 5'- cGUCGCaaccgucaUCGCCGCcGCGGCcauCGGCCu -3' miRNA: 3'- cUAGCG--------GGCGGUGuCGCCGcc-GCCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 32101 | 0.67 | 0.324924 |
Target: 5'- aGGUCGUcaCCGgCAUccaggaAGCGGUcaccgcGGCGGCCc -3' miRNA: 3'- -CUAGCG--GGCgGUG------UCGCCG------CCGCCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 48765 | 0.67 | 0.327856 |
Target: 5'- -cUgGCCCGCCAgGGUucccgccagcguggaGGCGGUGucauuGCCg -3' miRNA: 3'- cuAgCGGGCGGUgUCG---------------CCGCCGC-----CGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 17888 | 0.66 | 0.332291 |
Target: 5'- aGAagGaaUuCCugGGCGGCGGCGGCg -3' miRNA: 3'- -CUagCggGcGGugUCGCCGCCGCCGg -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 61200 | 0.66 | 0.335271 |
Target: 5'- ---gGCCUGCCcaccuugggugaaccGCAGCucggGGuCGGCGGUCa -3' miRNA: 3'- cuagCGGGCGG---------------UGUCG----CC-GCCGCCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 43918 | 0.66 | 0.339779 |
Target: 5'- --aCGCUggUGCCGUAGCGGgGGUGGgCg -3' miRNA: 3'- cuaGCGG--GCGGUGUCGCCgCCGCCgG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 61397 | 0.66 | 0.339779 |
Target: 5'- aGGUCGgCgGCaACAGCaacGGgGGCGGCa -3' miRNA: 3'- -CUAGCgGgCGgUGUCG---CCgCCGCCGg -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 13129 | 0.66 | 0.339779 |
Target: 5'- --cUGCCCGCCACcgcccuucGUGGCacGGCGGgUa -3' miRNA: 3'- cuaGCGGGCGGUGu-------CGCCG--CCGCCgG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 22907 | 0.66 | 0.346622 |
Target: 5'- gGGUCGCCCcggcgauGCCGUAGUaGCGGCccacgacaGGCCc -3' miRNA: 3'- -CUAGCGGG-------CGGUGUCGcCGCCG--------CCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 32632 | 0.66 | 0.355119 |
Target: 5'- --aCGUUCGCCACacucucuucacGGUGGCGGggaccugGGCCg -3' miRNA: 3'- cuaGCGGGCGGUG-----------UCGCCGCCg------CCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 60313 | 0.66 | 0.355119 |
Target: 5'- ---aGUCCGCCACuaGGCGugauccccgcGCGGCGgguGCCg -3' miRNA: 3'- cuagCGGGCGGUG--UCGC----------CGCCGC---CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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