Results 101 - 106 of 106 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 18433 | 3' | -64.6 | NC_004681.1 | + | 32632 | 0.66 | 0.355119 |
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Target: 5'- --aCGUUCGCCACacucucuucacGGUGGCGGggaccugGGCCg -3' miRNA: 3'- cuaGCGGGCGGUG-----------UCGCCGCCg------CCGG- -5' |
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| 18433 | 3' | -64.6 | NC_004681.1 | + | 27342 | 0.66 | 0.355119 |
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Target: 5'- uGUCGCCCGUgAgauUGGUGGUGuucaCGGCCa -3' miRNA: 3'- cUAGCGGGCGgU---GUCGCCGCc---GCCGG- -5' |
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| 18433 | 3' | -64.6 | NC_004681.1 | + | 50866 | 0.66 | 0.358245 |
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Target: 5'- -cUCGCUugugaGCCAgGGUGGCGGCucggacuugcucgauGGUCa -3' miRNA: 3'- cuAGCGGg----CGGUgUCGCCGCCG---------------CCGG- -5' |
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| 18433 | 3' | -64.6 | NC_004681.1 | + | 60196 | 0.66 | 0.36218 |
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Target: 5'- uGAUCGgcaCCCGCCGC-GCGGggaucacgccuagUGGCGGaCUu -3' miRNA: 3'- -CUAGC---GGGCGGUGuCGCC-------------GCCGCC-GG- -5' |
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| 18433 | 3' | -64.6 | NC_004681.1 | + | 5194 | 0.66 | 0.36297 |
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Target: 5'- --gCGCCCGCCAUGGCcGaGCuGUcGCCa -3' miRNA: 3'- cuaGCGGGCGGUGUCG-C-CGcCGcCGG- -5' |
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| 18433 | 3' | -64.6 | NC_004681.1 | + | 1361 | 0.66 | 0.36297 |
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Target: 5'- --aUGUUCGCCGuguuCuGCgaGGCGGUGGCCa -3' miRNA: 3'- cuaGCGGGCGGU----GuCG--CCGCCGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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