miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18433 3' -64.6 NC_004681.1 + 57902 0.67 0.317681
Target:  5'- -uUCGCCa-CCuCGGCGGCG-CGGCg -3'
miRNA:   3'- cuAGCGGgcGGuGUCGCCGCcGCCGg -5'
18433 3' -64.6 NC_004681.1 + 30675 0.67 0.316963
Target:  5'- cGGUCaaGCUCGCCuuccaucACGGCccuGGUGGCGGUg -3'
miRNA:   3'- -CUAG--CGGGCGG-------UGUCG---CCGCCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 18317 0.67 0.310559
Target:  5'- aGUCuGCCCGCC-CGGUacacccGGgGGUGcGCCg -3'
miRNA:   3'- cUAG-CGGGCGGuGUCG------CCgCCGC-CGG- -5'
18433 3' -64.6 NC_004681.1 + 6295 0.67 0.310559
Target:  5'- aGAUCauggGCCUGCCGCGGuCGGauGacccgaaGGCCg -3'
miRNA:   3'- -CUAG----CGGGCGGUGUC-GCCgcCg------CCGG- -5'
18433 3' -64.6 NC_004681.1 + 47176 0.67 0.303559
Target:  5'- -cUCGa-CGCCAaGGUGGUGGCGGgCa -3'
miRNA:   3'- cuAGCggGCGGUgUCGCCGCCGCCgG- -5'
18433 3' -64.6 NC_004681.1 + 61749 0.67 0.303559
Target:  5'- -cUCGCgCGCCAcCAGaCcGCGGCcGCCa -3'
miRNA:   3'- cuAGCGgGCGGU-GUC-GcCGCCGcCGG- -5'
18433 3' -64.6 NC_004681.1 + 5769 0.67 0.296681
Target:  5'- -cUCGCgcaaCGCCACcGCGGCGauguggaagaacGCuGGCCg -3'
miRNA:   3'- cuAGCGg---GCGGUGuCGCCGC------------CG-CCGG- -5'
18433 3' -64.6 NC_004681.1 + 52111 0.67 0.296681
Target:  5'- cAUUGCgCacaucucCCGCAGCcucaaGGUGGCGGCCa -3'
miRNA:   3'- cUAGCGgGc------GGUGUCG-----CCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 5916 0.67 0.296681
Target:  5'- --gCGCUucucgUGCCGCAGUaccaGGUuggGGCGGCCa -3'
miRNA:   3'- cuaGCGG-----GCGGUGUCG----CCG---CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 883 0.67 0.296681
Target:  5'- gGAUCGCCagcacuuccuucUGCCACcccgucaugGGCGGCaG-GGCCg -3'
miRNA:   3'- -CUAGCGG------------GCGGUG---------UCGCCGcCgCCGG- -5'
18433 3' -64.6 NC_004681.1 + 39335 0.67 0.28329
Target:  5'- --gCGCCCuuGCCGCGGCGcaCGGUGaGCUg -3'
miRNA:   3'- cuaGCGGG--CGGUGUCGCc-GCCGC-CGG- -5'
18433 3' -64.6 NC_004681.1 + 67051 0.67 0.28329
Target:  5'- uGUCGCCUucgaGCU-CGGCGcGCGGCaccagGGCCg -3'
miRNA:   3'- cUAGCGGG----CGGuGUCGC-CGCCG-----CCGG- -5'
18433 3' -64.6 NC_004681.1 + 40255 0.68 0.276776
Target:  5'- cAUCGCCuCGau-CuGCGGCGucGCGGCCu -3'
miRNA:   3'- cUAGCGG-GCgguGuCGCCGC--CGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 61355 0.68 0.270382
Target:  5'- aGAUCgGCCCGUCGCuGCGGUGGgCaacaGCUc -3'
miRNA:   3'- -CUAG-CGGGCGGUGuCGCCGCC-Gc---CGG- -5'
18433 3' -64.6 NC_004681.1 + 27752 0.68 0.270382
Target:  5'- -uUCGgugaCgCGCgGCAGCGGCGGCaGCg -3'
miRNA:   3'- cuAGCg---G-GCGgUGUCGCCGCCGcCGg -5'
18433 3' -64.6 NC_004681.1 + 61270 0.68 0.270382
Target:  5'- cGUCGCCgucgacccaguUGcCCugGGCGucGCGGCGGCg -3'
miRNA:   3'- cUAGCGG-----------GC-GGugUCGC--CGCCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 45374 0.68 0.264108
Target:  5'- -uUCGCCgGUCACgGGCGG-GGCGuCCg -3'
miRNA:   3'- cuAGCGGgCGGUG-UCGCCgCCGCcGG- -5'
18433 3' -64.6 NC_004681.1 + 32225 0.68 0.264108
Target:  5'- ---gGCCa-UCGCAGCGGCaGcGCGGCCu -3'
miRNA:   3'- cuagCGGgcGGUGUCGCCG-C-CGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 28050 0.68 0.264108
Target:  5'- --gCGCUgGCgGucgaGGCGGUGGCGGCa -3'
miRNA:   3'- cuaGCGGgCGgUg---UCGCCGCCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 18327 0.68 0.264108
Target:  5'- ---gGUUCGUC-CGGUGGCGGUGGCg -3'
miRNA:   3'- cuagCGGGCGGuGUCGCCGCCGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.