Results 41 - 60 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18433 | 3' | -64.6 | NC_004681.1 | + | 18327 | 0.68 | 0.264108 |
Target: 5'- ---gGUUCGUC-CGGUGGCGGUGGCg -3' miRNA: 3'- cuagCGGGCGGuGUCGCCGCCGCCGg -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 26449 | 0.68 | 0.257952 |
Target: 5'- -uUCGCgCCGCCAgAGUacGGCuaCGGCCu -3' miRNA: 3'- cuAGCG-GGCGGUgUCG--CCGccGCCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 18370 | 0.68 | 0.257952 |
Target: 5'- --gCGCCauCGaCAUGGCaggccaGGCGGCGGCCg -3' miRNA: 3'- cuaGCGG--GCgGUGUCG------CCGCCGCCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 27664 | 0.68 | 0.251913 |
Target: 5'- --cCGguuaCCGaUACGGCGGCGGCGGUg -3' miRNA: 3'- cuaGCg---GGCgGUGUCGCCGCCGCCGg -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 30342 | 0.68 | 0.251913 |
Target: 5'- --cCGgCCGCCGCcGCuGUGGCGGgCg -3' miRNA: 3'- cuaGCgGGCGGUGuCGcCGCCGCCgG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 41678 | 0.68 | 0.251316 |
Target: 5'- cAUCGCCgugCGCUGCcugcggGGUGGCgcugcauGGCGGCCg -3' miRNA: 3'- cUAGCGG---GCGGUG------UCGCCG-------CCGCCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 57804 | 0.68 | 0.250125 |
Target: 5'- --gCGCCgCGCCGCcgagguggcgaaggAGCGG-GGCuGGCCc -3' miRNA: 3'- cuaGCGG-GCGGUG--------------UCGCCgCCG-CCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 19913 | 0.68 | 0.245992 |
Target: 5'- gGGUCaCCgCGCaGCAcGCGGUacuGGCGGCCg -3' miRNA: 3'- -CUAGcGG-GCGgUGU-CGCCG---CCGCCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 8820 | 0.68 | 0.245992 |
Target: 5'- aGGUC-CCgGCUuCAGCGaccGCGGCGGCg -3' miRNA: 3'- -CUAGcGGgCGGuGUCGC---CGCCGCCGg -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 12485 | 0.68 | 0.245992 |
Target: 5'- ---aGCgUCGCCGCGGUGGUGGU-GCCa -3' miRNA: 3'- cuagCG-GGCGGUGUCGCCGCCGcCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 60662 | 0.69 | 0.240187 |
Target: 5'- -uUCGUCgGCCAgCGGCccgaGGCGuGCGGCg -3' miRNA: 3'- cuAGCGGgCGGU-GUCG----CCGC-CGCCGg -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 20655 | 0.69 | 0.240187 |
Target: 5'- ---aGCgCCGCCAUuuguGCGGCGGuuGCUg -3' miRNA: 3'- cuagCG-GGCGGUGu---CGCCGCCgcCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 64921 | 0.69 | 0.240187 |
Target: 5'- --gCGCCCGCCugGaGCacgaGGUGGCGacgcGCCu -3' miRNA: 3'- cuaGCGGGCGGugU-CG----CCGCCGC----CGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 14470 | 0.69 | 0.239613 |
Target: 5'- --gCGCgCGCCGCcuccgccgagcagGGCGcGCuGGUGGCCg -3' miRNA: 3'- cuaGCGgGCGGUG-------------UCGC-CG-CCGCCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 31577 | 0.69 | 0.234496 |
Target: 5'- --aUGCCaagCGCCGCAGCGaauugcguuGCGGUcaGGCCg -3' miRNA: 3'- cuaGCGG---GCGGUGUCGC---------CGCCG--CCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 16214 | 0.69 | 0.234496 |
Target: 5'- cGAUa-CCCGaCACAGCcGUGGCGGCUn -3' miRNA: 3'- -CUAgcGGGCgGUGUCGcCGCCGCCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 16105 | 0.69 | 0.233934 |
Target: 5'- gGcgCGCacagCCGCCACGGCugugucggguaucGGCuucgcggcgcuGGCGGCCa -3' miRNA: 3'- -CuaGCG----GGCGGUGUCG-------------CCG-----------CCGCCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 59177 | 0.69 | 0.22892 |
Target: 5'- cGUCGCCaccuauGUCACGGaCGGCcucccgGGCGGCUc -3' miRNA: 3'- cUAGCGGg-----CGGUGUC-GCCG------CCGCCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 62955 | 0.69 | 0.22892 |
Target: 5'- -uUCGgCgGUgGUGGCGGCGGCGGCg -3' miRNA: 3'- cuAGCgGgCGgUGUCGCCGCCGCCGg -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 66286 | 0.69 | 0.227268 |
Target: 5'- -cUUGCagCGCCACAucugguacaugcccGCGGUGGUGGCg -3' miRNA: 3'- cuAGCGg-GCGGUGU--------------CGCCGCCGCCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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