miRNA display CGI


Results 61 - 80 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18433 3' -64.6 NC_004681.1 + 25919 0.69 0.223455
Target:  5'- gGAUUGCCaugagcaCCGCGGUGGCGGUgaauGGCUu -3'
miRNA:   3'- -CUAGCGGgc-----GGUGUCGCCGCCG----CCGG- -5'
18433 3' -64.6 NC_004681.1 + 51839 0.69 0.223455
Target:  5'- -cUUGCCCGCgC-CGG-GGCGGCcGCCg -3'
miRNA:   3'- cuAGCGGGCG-GuGUCgCCGCCGcCGG- -5'
18433 3' -64.6 NC_004681.1 + 14654 0.69 0.218102
Target:  5'- --gCGgCCGUgGUGGCGGUGGCGGCg -3'
miRNA:   3'- cuaGCgGGCGgUGUCGCCGCCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 35047 0.69 0.218102
Target:  5'- -cUUGCUCGCCGCGGaCGGCaaccacaguGGCaGGCUc -3'
miRNA:   3'- cuAGCGGGCGGUGUC-GCCG---------CCG-CCGG- -5'
18433 3' -64.6 NC_004681.1 + 45581 0.69 0.216518
Target:  5'- cAUCGCCCGCaa-GGUGGCcGGUgccuccuccgcgucGGCCa -3'
miRNA:   3'- cUAGCGGGCGgugUCGCCG-CCG--------------CCGG- -5'
18433 3' -64.6 NC_004681.1 + 2229 0.69 0.212859
Target:  5'- ----aCCUGCCGgguuaccacauCAGCGGgGGUGGCCa -3'
miRNA:   3'- cuagcGGGCGGU-----------GUCGCCgCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 45044 0.69 0.212859
Target:  5'- ---aGCCCGa-GCucGCGGUGGCGGCUc -3'
miRNA:   3'- cuagCGGGCggUGu-CGCCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 7998 0.69 0.212859
Target:  5'- -cUCGgCgGCUuccucggaGGCGGCGGCGGUCu -3'
miRNA:   3'- cuAGCgGgCGGug------UCGCCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 21307 0.69 0.211824
Target:  5'- gGGUCuGCuCCGCCAgAGUGGCGacgcuguccauuCGGCCg -3'
miRNA:   3'- -CUAG-CG-GGCGGUgUCGCCGCc-----------GCCGG- -5'
18433 3' -64.6 NC_004681.1 + 65714 0.7 0.202698
Target:  5'- -cUCGCCaCGCCACuuGGCGGCGaagcagagaacGCGaGUCg -3'
miRNA:   3'- cuAGCGG-GCGGUG--UCGCCGC-----------CGC-CGG- -5'
18433 3' -64.6 NC_004681.1 + 44929 0.7 0.202698
Target:  5'- -cUCGCCC-CCAC-GCGGUGGa-GCCg -3'
miRNA:   3'- cuAGCGGGcGGUGuCGCCGCCgcCGG- -5'
18433 3' -64.6 NC_004681.1 + 16345 0.7 0.197777
Target:  5'- cAUC-UCCGCUGCGGCGGUGGgUGGCg -3'
miRNA:   3'- cUAGcGGGCGGUGUCGCCGCC-GCCGg -5'
18433 3' -64.6 NC_004681.1 + 24980 0.7 0.19296
Target:  5'- gGGUCGCCgcccuCGCCAUuGCuGGUgagggagccuuGGCGGCCg -3'
miRNA:   3'- -CUAGCGG-----GCGGUGuCG-CCG-----------CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 37392 0.7 0.19296
Target:  5'- --aUGCCCGCgGCcuucuuGGCGGCGaCGGUCa -3'
miRNA:   3'- cuaGCGGGCGgUG------UCGCCGCcGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 42353 0.7 0.188247
Target:  5'- --gCGCCUuCCGCgGGCGGgaccagcagcuCGGCGGCCg -3'
miRNA:   3'- cuaGCGGGcGGUG-UCGCC-----------GCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 49435 0.7 0.188247
Target:  5'- --gCGCCCGCgGCGccgccGUGGCGGaCGGUg -3'
miRNA:   3'- cuaGCGGGCGgUGU-----CGCCGCC-GCCGg -5'
18433 3' -64.6 NC_004681.1 + 26967 0.7 0.188247
Target:  5'- -cUCG-CCGCCAUAgGUGGCGGUGGggaCCg -3'
miRNA:   3'- cuAGCgGGCGGUGU-CGCCGCCGCC---GG- -5'
18433 3' -64.6 NC_004681.1 + 70452 0.7 0.188247
Target:  5'- cAUC-UCCGCCAUGGUGGUccuGCGGCCg -3'
miRNA:   3'- cUAGcGGGCGGUGUCGCCGc--CGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 69023 0.7 0.183635
Target:  5'- -cUCGaa-GUCuuCGGUGGCGGCGGCCg -3'
miRNA:   3'- cuAGCgggCGGu-GUCGCCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 14576 0.7 0.183635
Target:  5'- aGcgCGCCCuGCU-CGGCGGaGGCGGCg -3'
miRNA:   3'- -CuaGCGGG-CGGuGUCGCCgCCGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.