miRNA display CGI


Results 81 - 100 of 106 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18433 3' -64.6 NC_004681.1 + 9204 0.7 0.183635
Target:  5'- --aCGCCagaGCCcgagcCAGCGGCGccggugacgacGCGGCCa -3'
miRNA:   3'- cuaGCGGg--CGGu----GUCGCCGC-----------CGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 16188 0.7 0.179123
Target:  5'- --gUGCgCGCCGCGGUGGUgacgccaccgagGGCGGCa -3'
miRNA:   3'- cuaGCGgGCGGUGUCGCCG------------CCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 28127 0.7 0.179123
Target:  5'- ---gGcCCCGCgggcaACGGCGGCGGCGGaUCg -3'
miRNA:   3'- cuagC-GGGCGg----UGUCGCCGCCGCC-GG- -5'
18433 3' -64.6 NC_004681.1 + 3126 0.71 0.17471
Target:  5'- gGAUCGCgCGCC-CAGCGGCucGCccuccuccagGGCCu -3'
miRNA:   3'- -CUAGCGgGCGGuGUCGCCGc-CG----------CCGG- -5'
18433 3' -64.6 NC_004681.1 + 14397 0.71 0.170394
Target:  5'- cAUCGCCgaCGCCA-AGCGcaaGCaGGCGGCCg -3'
miRNA:   3'- cUAGCGG--GCGGUgUCGC---CG-CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 35790 0.71 0.170394
Target:  5'- -uUCGUCCGacuCCAUuGCGGgGcGCGGCCa -3'
miRNA:   3'- cuAGCGGGC---GGUGuCGCCgC-CGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 61769 0.71 0.170394
Target:  5'- -cUCGgCgGCgGCcuccGCGGCGGCGGCUu -3'
miRNA:   3'- cuAGCgGgCGgUGu---CGCCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 16448 0.71 0.158013
Target:  5'- cGUCGCcacccaCCGCCGCAGCGGaGaUGGCCu -3'
miRNA:   3'- cUAGCG------GGCGGUGUCGCCgCcGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 18728 0.71 0.150217
Target:  5'- cAUCGCCaaggGCgACGGCGGCGa-GGCCg -3'
miRNA:   3'- cUAGCGGg---CGgUGUCGCCGCcgCCGG- -5'
18433 3' -64.6 NC_004681.1 + 41928 0.71 0.150217
Target:  5'- aGAUCgGCCCGCUGCAGggaaaugcccCGGgaGGCGGCg -3'
miRNA:   3'- -CUAG-CGGGCGGUGUC----------GCCg-CCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 47374 0.72 0.142772
Target:  5'- aGUCGCCCGCCAacgcgccaCGGCGacGCGGUCc -3'
miRNA:   3'- cUAGCGGGCGGUguc-----GCCGC--CGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 24842 0.72 0.139177
Target:  5'- --gCGUCgGCgGC-GCgGGCGGCGGCCg -3'
miRNA:   3'- cuaGCGGgCGgUGuCG-CCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 58776 0.72 0.134628
Target:  5'- cGUCcCCCGCCAuCAggcagguguggcccGCGGCgcaGGCGGCCg -3'
miRNA:   3'- cUAGcGGGCGGU-GU--------------CGCCG---CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 69509 0.73 0.125615
Target:  5'- aGGUgCGCCaCGCCgugugcucACuGCuGCGGCGGCCg -3'
miRNA:   3'- -CUA-GCGG-GCGG--------UGuCGcCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 25249 0.73 0.113286
Target:  5'- --gCGCCCGCgGCGGCGGUugGGUGcGCUu -3'
miRNA:   3'- cuaGCGGGCGgUGUCGCCG--CCGC-CGG- -5'
18433 3' -64.6 NC_004681.1 + 60702 0.73 0.110385
Target:  5'- -cUCGUCaaguGCCGCAGCGGCGGCcucGUCg -3'
miRNA:   3'- cuAGCGGg---CGGUGUCGCCGCCGc--CGG- -5'
18433 3' -64.6 NC_004681.1 + 34848 0.73 0.107275
Target:  5'- -cUUGCCCcCUACuucgacaAGgGGCGGCGGCCg -3'
miRNA:   3'- cuAGCGGGcGGUG-------UCgCCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 25656 0.74 0.104791
Target:  5'- aGAUCGUggcagaggguaUgGCCACAGgGGCGG-GGCCa -3'
miRNA:   3'- -CUAGCG-----------GgCGGUGUCgCCGCCgCCGG- -5'
18433 3' -64.6 NC_004681.1 + 27625 0.74 0.102095
Target:  5'- --gCGCUgGCgGCGGCGGCGGCucuGGUCg -3'
miRNA:   3'- cuaGCGGgCGgUGUCGCCGCCG---CCGG- -5'
18433 3' -64.6 NC_004681.1 + 47202 0.74 0.091952
Target:  5'- -cUCG-UCGCU-CAGCGGCGGCGGCUc -3'
miRNA:   3'- cuAGCgGGCGGuGUCGCCGCCGCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.