Results 101 - 106 of 106 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 18433 | 3' | -64.6 | NC_004681.1 | + | 47202 | 0.74 | 0.091952 |
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Target: 5'- -cUCG-UCGCU-CAGCGGCGGCGGCUc -3' miRNA: 3'- cuAGCgGGCGGuGUCGCCGCCGCCGG- -5' |
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| 18433 | 3' | -64.6 | NC_004681.1 | + | 17527 | 0.74 | 0.091231 |
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Target: 5'- cGUUGCCCGuCCACAuguuggcgccacccGUGG-GGCGGCCg -3' miRNA: 3'- cUAGCGGGC-GGUGU--------------CGCCgCCGCCGG- -5' |
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| 18433 | 3' | -64.6 | NC_004681.1 | + | 13234 | 0.75 | 0.08957 |
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Target: 5'- --cCGCCgUGCCACgaagGGCGGUGGCGGgCa -3' miRNA: 3'- cuaGCGG-GCGGUG----UCGCCGCCGCCgG- -5' |
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| 18433 | 3' | -64.6 | NC_004681.1 | + | 26217 | 0.78 | 0.04781 |
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Target: 5'- -cUgGCCCGCCACGGCGGCGaugcccgcccccuacGCGGUg -3' miRNA: 3'- cuAgCGGGCGGUGUCGCCGC---------------CGCCGg -5' |
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| 18433 | 3' | -64.6 | NC_004681.1 | + | 49333 | 0.81 | 0.029884 |
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Target: 5'- --cCGUCCGCCACGGCGGCGccGCGGgCg -3' miRNA: 3'- cuaGCGGGCGGUGUCGCCGC--CGCCgG- -5' |
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| 18433 | 3' | -64.6 | NC_004681.1 | + | 30239 | 1.11 | 0.000153 |
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Target: 5'- aGAUCGCCCGCCACAGCGGCGGCGGCCg -3' miRNA: 3'- -CUAGCGGGCGGUGUCGCCGCCGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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