miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18433 3' -64.6 NC_004681.1 + 883 0.67 0.296681
Target:  5'- gGAUCGCCagcacuuccuucUGCCACcccgucaugGGCGGCaG-GGCCg -3'
miRNA:   3'- -CUAGCGG------------GCGGUG---------UCGCCGcCgCCGG- -5'
18433 3' -64.6 NC_004681.1 + 1361 0.66 0.36297
Target:  5'- --aUGUUCGCCGuguuCuGCgaGGCGGUGGCCa -3'
miRNA:   3'- cuaGCGGGCGGU----GuCG--CCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 2016 0.67 0.324195
Target:  5'- --cCGgCCGCgGCcaGGUGGUcguggagGGCGGCCg -3'
miRNA:   3'- cuaGCgGGCGgUG--UCGCCG-------CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 2229 0.69 0.212859
Target:  5'- ----aCCUGCCGgguuaccacauCAGCGGgGGUGGCCa -3'
miRNA:   3'- cuagcGGGCGGU-----------GUCGCCgCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 3126 0.71 0.17471
Target:  5'- gGAUCGCgCGCC-CAGCGGCucGCccuccuccagGGCCu -3'
miRNA:   3'- -CUAGCGgGCGGuGUCGCCGc-CG----------CCGG- -5'
18433 3' -64.6 NC_004681.1 + 5194 0.66 0.36297
Target:  5'- --gCGCCCGCCAUGGCcGaGCuGUcGCCa -3'
miRNA:   3'- cuaGCGGGCGGUGUCG-C-CGcCGcCGG- -5'
18433 3' -64.6 NC_004681.1 + 5769 0.67 0.296681
Target:  5'- -cUCGCgcaaCGCCACcGCGGCGauguggaagaacGCuGGCCg -3'
miRNA:   3'- cuAGCGg---GCGGUGuCGCCGC------------CG-CCGG- -5'
18433 3' -64.6 NC_004681.1 + 5916 0.67 0.296681
Target:  5'- --gCGCUucucgUGCCGCAGUaccaGGUuggGGCGGCCa -3'
miRNA:   3'- cuaGCGG-----GCGGUGUCG----CCG---CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 6295 0.67 0.310559
Target:  5'- aGAUCauggGCCUGCCGCGGuCGGauGacccgaaGGCCg -3'
miRNA:   3'- -CUAG----CGGGCGGUGUC-GCCgcCg------CCGG- -5'
18433 3' -64.6 NC_004681.1 + 7446 0.74 0.091952
Target:  5'- gGGagGCuUCGCCGCGGCGGCGG-GGUCa -3'
miRNA:   3'- -CUagCG-GGCGGUGUCGCCGCCgCCGG- -5'
18433 3' -64.6 NC_004681.1 + 7998 0.69 0.212859
Target:  5'- -cUCGgCgGCUuccucggaGGCGGCGGCGGUCu -3'
miRNA:   3'- cuAGCgGgCGGug------UCGCCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 8820 0.68 0.245992
Target:  5'- aGGUC-CCgGCUuCAGCGaccGCGGCGGCg -3'
miRNA:   3'- -CUAGcGGgCGGuGUCGC---CGCCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 9204 0.7 0.183635
Target:  5'- --aCGCCagaGCCcgagcCAGCGGCGccggugacgacGCGGCCa -3'
miRNA:   3'- cuaGCGGg--CGGu----GUCGCCGC-----------CGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 12485 0.68 0.245992
Target:  5'- ---aGCgUCGCCGCGGUGGUGGU-GCCa -3'
miRNA:   3'- cuagCG-GGCGGUGUCGCCGCCGcCGG- -5'
18433 3' -64.6 NC_004681.1 + 13129 0.66 0.339779
Target:  5'- --cUGCCCGCCACcgcccuucGUGGCacGGCGGgUa -3'
miRNA:   3'- cuaGCGGGCGGUGu-------CGCCG--CCGCCgG- -5'
18433 3' -64.6 NC_004681.1 + 13234 0.75 0.08957
Target:  5'- --cCGCCgUGCCACgaagGGCGGUGGCGGgCa -3'
miRNA:   3'- cuaGCGG-GCGGUG----UCGCCGCCGCCgG- -5'
18433 3' -64.6 NC_004681.1 + 14397 0.71 0.170394
Target:  5'- cAUCGCCgaCGCCA-AGCGcaaGCaGGCGGCCg -3'
miRNA:   3'- cUAGCGG--GCGGUgUCGC---CG-CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 14470 0.69 0.239613
Target:  5'- --gCGCgCGCCGCcuccgccgagcagGGCGcGCuGGUGGCCg -3'
miRNA:   3'- cuaGCGgGCGGUG-------------UCGC-CG-CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 14576 0.7 0.183635
Target:  5'- aGcgCGCCCuGCU-CGGCGGaGGCGGCg -3'
miRNA:   3'- -CuaGCGGG-CGGuGUCGCCgCCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 14654 0.69 0.218102
Target:  5'- --gCGgCCGUgGUGGCGGUGGCGGCg -3'
miRNA:   3'- cuaGCgGGCGgUGUCGCCGCCGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.