miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18433 3' -64.6 NC_004681.1 + 16105 0.69 0.233934
Target:  5'- gGcgCGCacagCCGCCACGGCugugucggguaucGGCuucgcggcgcuGGCGGCCa -3'
miRNA:   3'- -CuaGCG----GGCGGUGUCG-------------CCG-----------CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 16188 0.7 0.179123
Target:  5'- --gUGCgCGCCGCGGUGGUgacgccaccgagGGCGGCa -3'
miRNA:   3'- cuaGCGgGCGGUGUCGCCG------------CCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 16214 0.69 0.234496
Target:  5'- cGAUa-CCCGaCACAGCcGUGGCGGCUn -3'
miRNA:   3'- -CUAgcGGGCgGUGUCGcCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 16345 0.7 0.197777
Target:  5'- cAUC-UCCGCUGCGGCGGUGGgUGGCg -3'
miRNA:   3'- cUAGcGGGCGGUGUCGCCGCC-GCCGg -5'
18433 3' -64.6 NC_004681.1 + 16448 0.71 0.158013
Target:  5'- cGUCGCcacccaCCGCCGCAGCGGaGaUGGCCu -3'
miRNA:   3'- cUAGCG------GGCGGUGUCGCCgCcGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 17527 0.74 0.091231
Target:  5'- cGUUGCCCGuCCACAuguuggcgccacccGUGG-GGCGGCCg -3'
miRNA:   3'- cUAGCGGGC-GGUGU--------------CGCCgCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 17888 0.66 0.332291
Target:  5'- aGAagGaaUuCCugGGCGGCGGCGGCg -3'
miRNA:   3'- -CUagCggGcGGugUCGCCGCCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 18317 0.67 0.310559
Target:  5'- aGUCuGCCCGCC-CGGUacacccGGgGGUGcGCCg -3'
miRNA:   3'- cUAG-CGGGCGGuGUCG------CCgCCGC-CGG- -5'
18433 3' -64.6 NC_004681.1 + 18327 0.68 0.264108
Target:  5'- ---gGUUCGUC-CGGUGGCGGUGGCg -3'
miRNA:   3'- cuagCGGGCGGuGUCGCCGCCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 18370 0.68 0.257952
Target:  5'- --gCGCCauCGaCAUGGCaggccaGGCGGCGGCCg -3'
miRNA:   3'- cuaGCGG--GCgGUGUCG------CCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 18728 0.71 0.150217
Target:  5'- cAUCGCCaaggGCgACGGCGGCGa-GGCCg -3'
miRNA:   3'- cUAGCGGg---CGgUGUCGCCGCcgCCGG- -5'
18433 3' -64.6 NC_004681.1 + 19913 0.68 0.245992
Target:  5'- gGGUCaCCgCGCaGCAcGCGGUacuGGCGGCCg -3'
miRNA:   3'- -CUAGcGG-GCGgUGU-CGCCG---CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 20655 0.69 0.240187
Target:  5'- ---aGCgCCGCCAUuuguGCGGCGGuuGCUg -3'
miRNA:   3'- cuagCG-GGCGGUGu---CGCCGCCgcCGG- -5'
18433 3' -64.6 NC_004681.1 + 21307 0.69 0.211824
Target:  5'- gGGUCuGCuCCGCCAgAGUGGCGacgcuguccauuCGGCCg -3'
miRNA:   3'- -CUAG-CG-GGCGGUgUCGCCGCc-----------GCCGG- -5'
18433 3' -64.6 NC_004681.1 + 22907 0.66 0.346622
Target:  5'- gGGUCGCCCcggcgauGCCGUAGUaGCGGCccacgacaGGCCc -3'
miRNA:   3'- -CUAGCGGG-------CGGUGUCGcCGCCG--------CCGG- -5'
18433 3' -64.6 NC_004681.1 + 23684 0.68 0.264108
Target:  5'- --gCGCCCGCCuCcGCGGacauaGaGUGGCCc -3'
miRNA:   3'- cuaGCGGGCGGuGuCGCCg----C-CGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 24842 0.72 0.139177
Target:  5'- --gCGUCgGCgGC-GCgGGCGGCGGCCg -3'
miRNA:   3'- cuaGCGGgCGgUGuCG-CCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 24980 0.7 0.19296
Target:  5'- gGGUCGCCgcccuCGCCAUuGCuGGUgagggagccuuGGCGGCCg -3'
miRNA:   3'- -CUAGCGG-----GCGGUGuCG-CCG-----------CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 25249 0.73 0.113286
Target:  5'- --gCGCCCGCgGCGGCGGUugGGUGcGCUu -3'
miRNA:   3'- cuaGCGGGCGgUGUCGCCG--CCGC-CGG- -5'
18433 3' -64.6 NC_004681.1 + 25656 0.74 0.104791
Target:  5'- aGAUCGUggcagaggguaUgGCCACAGgGGCGG-GGCCa -3'
miRNA:   3'- -CUAGCG-----------GgCGGUGUCgCCGCCgCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.