miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18433 3' -64.6 NC_004681.1 + 25919 0.69 0.223455
Target:  5'- gGAUUGCCaugagcaCCGCGGUGGCGGUgaauGGCUu -3'
miRNA:   3'- -CUAGCGGgc-----GGUGUCGCCGCCG----CCGG- -5'
18433 3' -64.6 NC_004681.1 + 26217 0.78 0.04781
Target:  5'- -cUgGCCCGCCACGGCGGCGaugcccgcccccuacGCGGUg -3'
miRNA:   3'- cuAgCGGGCGGUGUCGCCGC---------------CGCCGg -5'
18433 3' -64.6 NC_004681.1 + 26449 0.68 0.257952
Target:  5'- -uUCGCgCCGCCAgAGUacGGCuaCGGCCu -3'
miRNA:   3'- cuAGCG-GGCGGUgUCG--CCGccGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 26967 0.7 0.188247
Target:  5'- -cUCG-CCGCCAUAgGUGGCGGUGGggaCCg -3'
miRNA:   3'- cuAGCgGGCGGUGU-CGCCGCCGCC---GG- -5'
18433 3' -64.6 NC_004681.1 + 27342 0.66 0.355119
Target:  5'- uGUCGCCCGUgAgauUGGUGGUGuucaCGGCCa -3'
miRNA:   3'- cUAGCGGGCGgU---GUCGCCGCc---GCCGG- -5'
18433 3' -64.6 NC_004681.1 + 27625 0.74 0.102095
Target:  5'- --gCGCUgGCgGCGGCGGCGGCucuGGUCg -3'
miRNA:   3'- cuaGCGGgCGgUGUCGCCGCCG---CCGG- -5'
18433 3' -64.6 NC_004681.1 + 27664 0.68 0.251913
Target:  5'- --cCGguuaCCGaUACGGCGGCGGCGGUg -3'
miRNA:   3'- cuaGCg---GGCgGUGUCGCCGCCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 27752 0.68 0.270382
Target:  5'- -uUCGgugaCgCGCgGCAGCGGCGGCaGCg -3'
miRNA:   3'- cuAGCg---G-GCGgUGUCGCCGCCGcCGg -5'
18433 3' -64.6 NC_004681.1 + 28050 0.68 0.264108
Target:  5'- --gCGCUgGCgGucgaGGCGGUGGCGGCa -3'
miRNA:   3'- cuaGCGGgCGgUg---UCGCCGCCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 28127 0.7 0.179123
Target:  5'- ---gGcCCCGCgggcaACGGCGGCGGCGGaUCg -3'
miRNA:   3'- cuagC-GGGCGg----UGUCGCCGCCGCC-GG- -5'
18433 3' -64.6 NC_004681.1 + 30027 0.67 0.324924
Target:  5'- cGUCGCaaccgucaUCGCCGCcGCGGCcauCGGCCu -3'
miRNA:   3'- cUAGCG--------GGCGGUGuCGCCGcc-GCCGG- -5'
18433 3' -64.6 NC_004681.1 + 30239 1.11 0.000153
Target:  5'- aGAUCGCCCGCCACAGCGGCGGCGGCCg -3'
miRNA:   3'- -CUAGCGGGCGGUGUCGCCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 30342 0.68 0.251913
Target:  5'- --cCGgCCGCCGCcGCuGUGGCGGgCg -3'
miRNA:   3'- cuaGCgGGCGGUGuCGcCGCCGCCgG- -5'
18433 3' -64.6 NC_004681.1 + 30675 0.67 0.316963
Target:  5'- cGGUCaaGCUCGCCuuccaucACGGCccuGGUGGCGGUg -3'
miRNA:   3'- -CUAG--CGGGCGG-------UGUCG---CCGCCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 31577 0.69 0.234496
Target:  5'- --aUGCCaagCGCCGCAGCGaauugcguuGCGGUcaGGCCg -3'
miRNA:   3'- cuaGCGG---GCGGUGUCGC---------CGCCG--CCGG- -5'
18433 3' -64.6 NC_004681.1 + 32101 0.67 0.324924
Target:  5'- aGGUCGUcaCCGgCAUccaggaAGCGGUcaccgcGGCGGCCc -3'
miRNA:   3'- -CUAGCG--GGCgGUG------UCGCCG------CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 32225 0.68 0.264108
Target:  5'- ---gGCCa-UCGCAGCGGCaGcGCGGCCu -3'
miRNA:   3'- cuagCGGgcGGUGUCGCCG-C-CGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 32632 0.66 0.355119
Target:  5'- --aCGUUCGCCACacucucuucacGGUGGCGGggaccugGGCCg -3'
miRNA:   3'- cuaGCGGGCGGUG-----------UCGCCGCCg------CCGG- -5'
18433 3' -64.6 NC_004681.1 + 34848 0.73 0.107275
Target:  5'- -cUUGCCCcCUACuucgacaAGgGGCGGCGGCCg -3'
miRNA:   3'- cuAGCGGGcGGUG-------UCgCCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 35047 0.69 0.218102
Target:  5'- -cUUGCUCGCCGCGGaCGGCaaccacaguGGCaGGCUc -3'
miRNA:   3'- cuAGCGGGCGGUGUC-GCCG---------CCG-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.