miRNA display CGI


Results 81 - 100 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18433 3' -64.6 NC_004681.1 + 50866 0.66 0.358245
Target:  5'- -cUCGCUugugaGCCAgGGUGGCGGCucggacuugcucgauGGUCa -3'
miRNA:   3'- cuAGCGGg----CGGUgUCGCCGCCG---------------CCGG- -5'
18433 3' -64.6 NC_004681.1 + 51839 0.69 0.223455
Target:  5'- -cUUGCCCGCgC-CGG-GGCGGCcGCCg -3'
miRNA:   3'- cuAGCGGGCG-GuGUCgCCGCCGcCGG- -5'
18433 3' -64.6 NC_004681.1 + 52111 0.67 0.296681
Target:  5'- cAUUGCgCacaucucCCGCAGCcucaaGGUGGCGGCCa -3'
miRNA:   3'- cUAGCGgGc------GGUGUCG-----CCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 53217 0.67 0.322738
Target:  5'- cAUCGCCU-CCGCuagcucaggugucgAGUGGCaccugcaccaGGCGGCCa -3'
miRNA:   3'- cUAGCGGGcGGUG--------------UCGCCG----------CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 57804 0.68 0.250125
Target:  5'- --gCGCCgCGCCGCcgagguggcgaaggAGCGG-GGCuGGCCc -3'
miRNA:   3'- cuaGCGG-GCGGUG--------------UCGCCgCCG-CCGG- -5'
18433 3' -64.6 NC_004681.1 + 57902 0.67 0.317681
Target:  5'- -uUCGCCa-CCuCGGCGGCG-CGGCg -3'
miRNA:   3'- cuAGCGGgcGGuGUCGCCGCcGCCGg -5'
18433 3' -64.6 NC_004681.1 + 58776 0.72 0.134628
Target:  5'- cGUCcCCCGCCAuCAggcagguguggcccGCGGCgcaGGCGGCCg -3'
miRNA:   3'- cUAGcGGGCGGU-GU--------------CGCCG---CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 59177 0.69 0.22892
Target:  5'- cGUCGCCaccuauGUCACGGaCGGCcucccgGGCGGCUc -3'
miRNA:   3'- cUAGCGGg-----CGGUGUC-GCCG------CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 60196 0.66 0.36218
Target:  5'- uGAUCGgcaCCCGCCGC-GCGGggaucacgccuagUGGCGGaCUu -3'
miRNA:   3'- -CUAGC---GGGCGGUGuCGCC-------------GCCGCC-GG- -5'
18433 3' -64.6 NC_004681.1 + 60313 0.66 0.355119
Target:  5'- ---aGUCCGCCACuaGGCGugauccccgcGCGGCGgguGCCg -3'
miRNA:   3'- cuagCGGGCGGUG--UCGC----------CGCCGC---CGG- -5'
18433 3' -64.6 NC_004681.1 + 60662 0.69 0.240187
Target:  5'- -uUCGUCgGCCAgCGGCccgaGGCGuGCGGCg -3'
miRNA:   3'- cuAGCGGgCGGU-GUCG----CCGC-CGCCGg -5'
18433 3' -64.6 NC_004681.1 + 60702 0.73 0.110385
Target:  5'- -cUCGUCaaguGCCGCAGCGGCGGCcucGUCg -3'
miRNA:   3'- cuAGCGGg---CGGUGUCGCCGCCGc--CGG- -5'
18433 3' -64.6 NC_004681.1 + 61200 0.66 0.335271
Target:  5'- ---gGCCUGCCcaccuugggugaaccGCAGCucggGGuCGGCGGUCa -3'
miRNA:   3'- cuagCGGGCGG---------------UGUCG----CC-GCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 61270 0.68 0.270382
Target:  5'- cGUCGCCgucgacccaguUGcCCugGGCGucGCGGCGGCg -3'
miRNA:   3'- cUAGCGG-----------GC-GGugUCGC--CGCCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 61355 0.68 0.270382
Target:  5'- aGAUCgGCCCGUCGCuGCGGUGGgCaacaGCUc -3'
miRNA:   3'- -CUAG-CGGGCGGUGuCGCCGCC-Gc---CGG- -5'
18433 3' -64.6 NC_004681.1 + 61397 0.66 0.339779
Target:  5'- aGGUCGgCgGCaACAGCaacGGgGGCGGCa -3'
miRNA:   3'- -CUAGCgGgCGgUGUCG---CCgCCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 61749 0.67 0.303559
Target:  5'- -cUCGCgCGCCAcCAGaCcGCGGCcGCCa -3'
miRNA:   3'- cuAGCGgGCGGU-GUC-GcCGCCGcCGG- -5'
18433 3' -64.6 NC_004681.1 + 61769 0.71 0.170394
Target:  5'- -cUCGgCgGCgGCcuccGCGGCGGCGGCUu -3'
miRNA:   3'- cuAGCgGgCGgUGu---CGCCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 62955 0.69 0.22892
Target:  5'- -uUCGgCgGUgGUGGCGGCGGCGGCg -3'
miRNA:   3'- cuAGCgGgCGgUGUCGCCGCCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 64921 0.69 0.240187
Target:  5'- --gCGCCCGCCugGaGCacgaGGUGGCGacgcGCCu -3'
miRNA:   3'- cuaGCGGGCGGugU-CG----CCGCCGC----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.