Results 101 - 106 of 106 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 18433 | 3' | -64.6 | NC_004681.1 | + | 65714 | 0.7 | 0.202698 |
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Target: 5'- -cUCGCCaCGCCACuuGGCGGCGaagcagagaacGCGaGUCg -3' miRNA: 3'- cuAGCGG-GCGGUG--UCGCCGC-----------CGC-CGG- -5' |
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| 18433 | 3' | -64.6 | NC_004681.1 | + | 66286 | 0.69 | 0.227268 |
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Target: 5'- -cUUGCagCGCCACAucugguacaugcccGCGGUGGUGGCg -3' miRNA: 3'- cuAGCGg-GCGGUGU--------------CGCCGCCGCCGg -5' |
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| 18433 | 3' | -64.6 | NC_004681.1 | + | 67051 | 0.67 | 0.28329 |
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Target: 5'- uGUCGCCUucgaGCU-CGGCGcGCGGCaccagGGCCg -3' miRNA: 3'- cUAGCGGG----CGGuGUCGC-CGCCG-----CCGG- -5' |
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| 18433 | 3' | -64.6 | NC_004681.1 | + | 69023 | 0.7 | 0.183635 |
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Target: 5'- -cUCGaa-GUCuuCGGUGGCGGCGGCCg -3' miRNA: 3'- cuAGCgggCGGu-GUCGCCGCCGCCGG- -5' |
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| 18433 | 3' | -64.6 | NC_004681.1 | + | 69509 | 0.73 | 0.125615 |
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Target: 5'- aGGUgCGCCaCGCCgugugcucACuGCuGCGGCGGCCg -3' miRNA: 3'- -CUA-GCGG-GCGG--------UGuCGcCGCCGCCGG- -5' |
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| 18433 | 3' | -64.6 | NC_004681.1 | + | 70452 | 0.7 | 0.188247 |
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Target: 5'- cAUC-UCCGCCAUGGUGGUccuGCGGCCg -3' miRNA: 3'- cUAGcGGGCGGUGUCGCCGc--CGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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