Results 1 - 20 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18433 | 3' | -64.6 | NC_004681.1 | + | 70452 | 0.7 | 0.188247 |
Target: 5'- cAUC-UCCGCCAUGGUGGUccuGCGGCCg -3' miRNA: 3'- cUAGcGGGCGGUGUCGCCGc--CGCCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 69509 | 0.73 | 0.125615 |
Target: 5'- aGGUgCGCCaCGCCgugugcucACuGCuGCGGCGGCCg -3' miRNA: 3'- -CUA-GCGG-GCGG--------UGuCGcCGCCGCCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 69023 | 0.7 | 0.183635 |
Target: 5'- -cUCGaa-GUCuuCGGUGGCGGCGGCCg -3' miRNA: 3'- cuAGCgggCGGu-GUCGCCGCCGCCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 67051 | 0.67 | 0.28329 |
Target: 5'- uGUCGCCUucgaGCU-CGGCGcGCGGCaccagGGCCg -3' miRNA: 3'- cUAGCGGG----CGGuGUCGC-CGCCG-----CCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 66286 | 0.69 | 0.227268 |
Target: 5'- -cUUGCagCGCCACAucugguacaugcccGCGGUGGUGGCg -3' miRNA: 3'- cuAGCGg-GCGGUGU--------------CGCCGCCGCCGg -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 65714 | 0.7 | 0.202698 |
Target: 5'- -cUCGCCaCGCCACuuGGCGGCGaagcagagaacGCGaGUCg -3' miRNA: 3'- cuAGCGG-GCGGUG--UCGCCGC-----------CGC-CGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 64921 | 0.69 | 0.240187 |
Target: 5'- --gCGCCCGCCugGaGCacgaGGUGGCGacgcGCCu -3' miRNA: 3'- cuaGCGGGCGGugU-CG----CCGCCGC----CGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 62955 | 0.69 | 0.22892 |
Target: 5'- -uUCGgCgGUgGUGGCGGCGGCGGCg -3' miRNA: 3'- cuAGCgGgCGgUGUCGCCGCCGCCGg -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 61769 | 0.71 | 0.170394 |
Target: 5'- -cUCGgCgGCgGCcuccGCGGCGGCGGCUu -3' miRNA: 3'- cuAGCgGgCGgUGu---CGCCGCCGCCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 61749 | 0.67 | 0.303559 |
Target: 5'- -cUCGCgCGCCAcCAGaCcGCGGCcGCCa -3' miRNA: 3'- cuAGCGgGCGGU-GUC-GcCGCCGcCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 61397 | 0.66 | 0.339779 |
Target: 5'- aGGUCGgCgGCaACAGCaacGGgGGCGGCa -3' miRNA: 3'- -CUAGCgGgCGgUGUCG---CCgCCGCCGg -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 61355 | 0.68 | 0.270382 |
Target: 5'- aGAUCgGCCCGUCGCuGCGGUGGgCaacaGCUc -3' miRNA: 3'- -CUAG-CGGGCGGUGuCGCCGCC-Gc---CGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 61270 | 0.68 | 0.270382 |
Target: 5'- cGUCGCCgucgacccaguUGcCCugGGCGucGCGGCGGCg -3' miRNA: 3'- cUAGCGG-----------GC-GGugUCGC--CGCCGCCGg -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 61200 | 0.66 | 0.335271 |
Target: 5'- ---gGCCUGCCcaccuugggugaaccGCAGCucggGGuCGGCGGUCa -3' miRNA: 3'- cuagCGGGCGG---------------UGUCG----CC-GCCGCCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 60702 | 0.73 | 0.110385 |
Target: 5'- -cUCGUCaaguGCCGCAGCGGCGGCcucGUCg -3' miRNA: 3'- cuAGCGGg---CGGUGUCGCCGCCGc--CGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 60662 | 0.69 | 0.240187 |
Target: 5'- -uUCGUCgGCCAgCGGCccgaGGCGuGCGGCg -3' miRNA: 3'- cuAGCGGgCGGU-GUCG----CCGC-CGCCGg -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 60313 | 0.66 | 0.355119 |
Target: 5'- ---aGUCCGCCACuaGGCGugauccccgcGCGGCGgguGCCg -3' miRNA: 3'- cuagCGGGCGGUG--UCGC----------CGCCGC---CGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 60196 | 0.66 | 0.36218 |
Target: 5'- uGAUCGgcaCCCGCCGC-GCGGggaucacgccuagUGGCGGaCUu -3' miRNA: 3'- -CUAGC---GGGCGGUGuCGCC-------------GCCGCC-GG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 59177 | 0.69 | 0.22892 |
Target: 5'- cGUCGCCaccuauGUCACGGaCGGCcucccgGGCGGCUc -3' miRNA: 3'- cUAGCGGg-----CGGUGUC-GCCG------CCGCCGG- -5' |
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18433 | 3' | -64.6 | NC_004681.1 | + | 58776 | 0.72 | 0.134628 |
Target: 5'- cGUCcCCCGCCAuCAggcagguguggcccGCGGCgcaGGCGGCCg -3' miRNA: 3'- cUAGcGGGCGGU-GU--------------CGCCG---CCGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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