miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18433 3' -64.6 NC_004681.1 + 57902 0.67 0.317681
Target:  5'- -uUCGCCa-CCuCGGCGGCG-CGGCg -3'
miRNA:   3'- cuAGCGGgcGGuGUCGCCGCcGCCGg -5'
18433 3' -64.6 NC_004681.1 + 57804 0.68 0.250125
Target:  5'- --gCGCCgCGCCGCcgagguggcgaaggAGCGG-GGCuGGCCc -3'
miRNA:   3'- cuaGCGG-GCGGUG--------------UCGCCgCCG-CCGG- -5'
18433 3' -64.6 NC_004681.1 + 53217 0.67 0.322738
Target:  5'- cAUCGCCU-CCGCuagcucaggugucgAGUGGCaccugcaccaGGCGGCCa -3'
miRNA:   3'- cUAGCGGGcGGUG--------------UCGCCG----------CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 52111 0.67 0.296681
Target:  5'- cAUUGCgCacaucucCCGCAGCcucaaGGUGGCGGCCa -3'
miRNA:   3'- cUAGCGgGc------GGUGUCG-----CCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 51839 0.69 0.223455
Target:  5'- -cUUGCCCGCgC-CGG-GGCGGCcGCCg -3'
miRNA:   3'- cuAGCGGGCG-GuGUCgCCGCCGcCGG- -5'
18433 3' -64.6 NC_004681.1 + 50866 0.66 0.358245
Target:  5'- -cUCGCUugugaGCCAgGGUGGCGGCucggacuugcucgauGGUCa -3'
miRNA:   3'- cuAGCGGg----CGGUgUCGCCGCCG---------------CCGG- -5'
18433 3' -64.6 NC_004681.1 + 49435 0.7 0.188247
Target:  5'- --gCGCCCGCgGCGccgccGUGGCGGaCGGUg -3'
miRNA:   3'- cuaGCGGGCGgUGU-----CGCCGCC-GCCGg -5'
18433 3' -64.6 NC_004681.1 + 49333 0.81 0.029884
Target:  5'- --cCGUCCGCCACGGCGGCGccGCGGgCg -3'
miRNA:   3'- cuaGCGGGCGGUGUCGCCGC--CGCCgG- -5'
18433 3' -64.6 NC_004681.1 + 48765 0.67 0.327856
Target:  5'- -cUgGCCCGCCAgGGUucccgccagcguggaGGCGGUGucauuGCCg -3'
miRNA:   3'- cuAgCGGGCGGUgUCG---------------CCGCCGC-----CGG- -5'
18433 3' -64.6 NC_004681.1 + 47374 0.72 0.142772
Target:  5'- aGUCGCCCGCCAacgcgccaCGGCGacGCGGUCc -3'
miRNA:   3'- cUAGCGGGCGGUguc-----GCCGC--CGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 47202 0.74 0.091952
Target:  5'- -cUCG-UCGCU-CAGCGGCGGCGGCUc -3'
miRNA:   3'- cuAGCgGGCGGuGUCGCCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 47176 0.67 0.303559
Target:  5'- -cUCGa-CGCCAaGGUGGUGGCGGgCa -3'
miRNA:   3'- cuAGCggGCGGUgUCGCCGCCGCCgG- -5'
18433 3' -64.6 NC_004681.1 + 47046 0.66 0.355119
Target:  5'- cAUCGCCuUGUCGCc-CGaGuCGGCGGCCu -3'
miRNA:   3'- cUAGCGG-GCGGUGucGC-C-GCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 45581 0.69 0.216518
Target:  5'- cAUCGCCCGCaa-GGUGGCcGGUgccuccuccgcgucGGCCa -3'
miRNA:   3'- cUAGCGGGCGgugUCGCCG-CCG--------------CCGG- -5'
18433 3' -64.6 NC_004681.1 + 45374 0.68 0.264108
Target:  5'- -uUCGCCgGUCACgGGCGG-GGCGuCCg -3'
miRNA:   3'- cuAGCGGgCGGUG-UCGCCgCCGCcGG- -5'
18433 3' -64.6 NC_004681.1 + 45044 0.69 0.212859
Target:  5'- ---aGCCCGa-GCucGCGGUGGCGGCUc -3'
miRNA:   3'- cuagCGGGCggUGu-CGCCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 44929 0.7 0.202698
Target:  5'- -cUCGCCC-CCAC-GCGGUGGa-GCCg -3'
miRNA:   3'- cuAGCGGGcGGUGuCGCCGCCgcCGG- -5'
18433 3' -64.6 NC_004681.1 + 44680 0.67 0.317681
Target:  5'- --gCGgCgGCCGCgAGC-GCGGCGGCg -3'
miRNA:   3'- cuaGCgGgCGGUG-UCGcCGCCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 43918 0.66 0.339779
Target:  5'- --aCGCUggUGCCGUAGCGGgGGUGGgCg -3'
miRNA:   3'- cuaGCGG--GCGGUGUCGCCgCCGCCgG- -5'
18433 3' -64.6 NC_004681.1 + 42353 0.7 0.188247
Target:  5'- --gCGCCUuCCGCgGGCGGgaccagcagcuCGGCGGCCg -3'
miRNA:   3'- cuaGCGGGcGGUG-UCGCC-----------GCCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.