miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18433 3' -64.6 NC_004681.1 + 62955 0.69 0.22892
Target:  5'- -uUCGgCgGUgGUGGCGGCGGCGGCg -3'
miRNA:   3'- cuAGCgGgCGgUGUCGCCGCCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 3126 0.71 0.17471
Target:  5'- gGAUCGCgCGCC-CAGCGGCucGCccuccuccagGGCCu -3'
miRNA:   3'- -CUAGCGgGCGGuGUCGCCGc-CG----------CCGG- -5'
18433 3' -64.6 NC_004681.1 + 28127 0.7 0.179123
Target:  5'- ---gGcCCCGCgggcaACGGCGGCGGCGGaUCg -3'
miRNA:   3'- cuagC-GGGCGg----UGUCGCCGCCGCC-GG- -5'
18433 3' -64.6 NC_004681.1 + 70452 0.7 0.188247
Target:  5'- cAUC-UCCGCCAUGGUGGUccuGCGGCCg -3'
miRNA:   3'- cUAGcGGGCGGUGUCGCCGc--CGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 37392 0.7 0.19296
Target:  5'- --aUGCCCGCgGCcuucuuGGCGGCGaCGGUCa -3'
miRNA:   3'- cuaGCGGGCGgUG------UCGCCGCcGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 16345 0.7 0.197777
Target:  5'- cAUC-UCCGCUGCGGCGGUGGgUGGCg -3'
miRNA:   3'- cUAGcGGGCGGUGUCGCCGCC-GCCGg -5'
18433 3' -64.6 NC_004681.1 + 44929 0.7 0.202698
Target:  5'- -cUCGCCC-CCAC-GCGGUGGa-GCCg -3'
miRNA:   3'- cuAGCGGGcGGUGuCGCCGCCgcCGG- -5'
18433 3' -64.6 NC_004681.1 + 45581 0.69 0.216518
Target:  5'- cAUCGCCCGCaa-GGUGGCcGGUgccuccuccgcgucGGCCa -3'
miRNA:   3'- cUAGCGGGCGgugUCGCCG-CCG--------------CCGG- -5'
18433 3' -64.6 NC_004681.1 + 35047 0.69 0.218102
Target:  5'- -cUUGCUCGCCGCGGaCGGCaaccacaguGGCaGGCUc -3'
miRNA:   3'- cuAGCGGGCGGUGUC-GCCG---------CCG-CCGG- -5'
18433 3' -64.6 NC_004681.1 + 14397 0.71 0.170394
Target:  5'- cAUCGCCgaCGCCA-AGCGcaaGCaGGCGGCCg -3'
miRNA:   3'- cUAGCGG--GCGGUgUCGC---CG-CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 35790 0.71 0.170394
Target:  5'- -uUCGUCCGacuCCAUuGCGGgGcGCGGCCa -3'
miRNA:   3'- cuAGCGGGC---GGUGuCGCCgC-CGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 18728 0.71 0.150217
Target:  5'- cAUCGCCaaggGCgACGGCGGCGa-GGCCg -3'
miRNA:   3'- cUAGCGGg---CGgUGUCGCCGCcgCCGG- -5'
18433 3' -64.6 NC_004681.1 + 49333 0.81 0.029884
Target:  5'- --cCGUCCGCCACGGCGGCGccGCGGgCg -3'
miRNA:   3'- cuaGCGGGCGGUGUCGCCGC--CGCCgG- -5'
18433 3' -64.6 NC_004681.1 + 26217 0.78 0.04781
Target:  5'- -cUgGCCCGCCACGGCGGCGaugcccgcccccuacGCGGUg -3'
miRNA:   3'- cuAgCGGGCGGUGUCGCCGC---------------CGCCGg -5'
18433 3' -64.6 NC_004681.1 + 27625 0.74 0.102095
Target:  5'- --gCGCUgGCgGCGGCGGCGGCucuGGUCg -3'
miRNA:   3'- cuaGCGGgCGgUGUCGCCGCCG---CCGG- -5'
18433 3' -64.6 NC_004681.1 + 25656 0.74 0.104791
Target:  5'- aGAUCGUggcagaggguaUgGCCACAGgGGCGG-GGCCa -3'
miRNA:   3'- -CUAGCG-----------GgCGGUGUCgCCGCCgCCGG- -5'
18433 3' -64.6 NC_004681.1 + 25249 0.73 0.113286
Target:  5'- --gCGCCCGCgGCGGCGGUugGGUGcGCUu -3'
miRNA:   3'- cuaGCGGGCGgUGUCGCCG--CCGC-CGG- -5'
18433 3' -64.6 NC_004681.1 + 69509 0.73 0.125615
Target:  5'- aGGUgCGCCaCGCCgugugcucACuGCuGCGGCGGCCg -3'
miRNA:   3'- -CUA-GCGG-GCGG--------UGuCGcCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 24842 0.72 0.139177
Target:  5'- --gCGUCgGCgGC-GCgGGCGGCGGCCg -3'
miRNA:   3'- cuaGCGGgCGgUGuCG-CCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 47374 0.72 0.142772
Target:  5'- aGUCGCCCGCCAacgcgccaCGGCGacGCGGUCc -3'
miRNA:   3'- cUAGCGGGCGGUguc-----GCCGC--CGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.