miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18433 3' -64.6 NC_004681.1 + 28127 0.7 0.179123
Target:  5'- ---gGcCCCGCgggcaACGGCGGCGGCGGaUCg -3'
miRNA:   3'- cuagC-GGGCGg----UGUCGCCGCCGCC-GG- -5'
18433 3' -64.6 NC_004681.1 + 64921 0.69 0.240187
Target:  5'- --gCGCCCGCCugGaGCacgaGGUGGCGacgcGCCu -3'
miRNA:   3'- cuaGCGGGCGGugU-CG----CCGCCGC----CGG- -5'
18433 3' -64.6 NC_004681.1 + 14470 0.69 0.239613
Target:  5'- --gCGCgCGCCGCcuccgccgagcagGGCGcGCuGGUGGCCg -3'
miRNA:   3'- cuaGCGgGCGGUG-------------UCGC-CG-CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 16105 0.69 0.233934
Target:  5'- gGcgCGCacagCCGCCACGGCugugucggguaucGGCuucgcggcgcuGGCGGCCa -3'
miRNA:   3'- -CuaGCG----GGCGGUGUCG-------------CCG-----------CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 59177 0.69 0.22892
Target:  5'- cGUCGCCaccuauGUCACGGaCGGCcucccgGGCGGCUc -3'
miRNA:   3'- cUAGCGGg-----CGGUGUC-GCCG------CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 62955 0.69 0.22892
Target:  5'- -uUCGgCgGUgGUGGCGGCGGCGGCg -3'
miRNA:   3'- cuAGCgGgCGgUGUCGCCGCCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 35047 0.69 0.218102
Target:  5'- -cUUGCUCGCCGCGGaCGGCaaccacaguGGCaGGCUc -3'
miRNA:   3'- cuAGCGGGCGGUGUC-GCCG---------CCG-CCGG- -5'
18433 3' -64.6 NC_004681.1 + 45581 0.69 0.216518
Target:  5'- cAUCGCCCGCaa-GGUGGCcGGUgccuccuccgcgucGGCCa -3'
miRNA:   3'- cUAGCGGGCGgugUCGCCG-CCG--------------CCGG- -5'
18433 3' -64.6 NC_004681.1 + 44929 0.7 0.202698
Target:  5'- -cUCGCCC-CCAC-GCGGUGGa-GCCg -3'
miRNA:   3'- cuAGCGGGcGGUGuCGCCGCCgcCGG- -5'
18433 3' -64.6 NC_004681.1 + 16345 0.7 0.197777
Target:  5'- cAUC-UCCGCUGCGGCGGUGGgUGGCg -3'
miRNA:   3'- cUAGcGGGCGGUGUCGCCGCC-GCCGg -5'
18433 3' -64.6 NC_004681.1 + 37392 0.7 0.19296
Target:  5'- --aUGCCCGCgGCcuucuuGGCGGCGaCGGUCa -3'
miRNA:   3'- cuaGCGGGCGgUG------UCGCCGCcGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 70452 0.7 0.188247
Target:  5'- cAUC-UCCGCCAUGGUGGUccuGCGGCCg -3'
miRNA:   3'- cUAGcGGGCGGUGUCGCCGc--CGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 41928 0.71 0.150217
Target:  5'- aGAUCgGCCCGCUGCAGggaaaugcccCGGgaGGCGGCg -3'
miRNA:   3'- -CUAG-CGGGCGGUGUC----------GCCg-CCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 58776 0.72 0.134628
Target:  5'- cGUCcCCCGCCAuCAggcagguguggcccGCGGCgcaGGCGGCCg -3'
miRNA:   3'- cUAGcGGGCGGU-GU--------------CGCCG---CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 60702 0.73 0.110385
Target:  5'- -cUCGUCaaguGCCGCAGCGGCGGCcucGUCg -3'
miRNA:   3'- cuAGCGGg---CGGUGUCGCCGCCGc--CGG- -5'
18433 3' -64.6 NC_004681.1 + 34848 0.73 0.107275
Target:  5'- -cUUGCCCcCUACuucgacaAGgGGCGGCGGCCg -3'
miRNA:   3'- cuAGCGGGcGGUG-------UCgCCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 7446 0.74 0.091952
Target:  5'- gGGagGCuUCGCCGCGGCGGCGG-GGUCa -3'
miRNA:   3'- -CUagCG-GGCGGUGUCGCCGCCgCCGG- -5'
18433 3' -64.6 NC_004681.1 + 47202 0.74 0.091952
Target:  5'- -cUCG-UCGCU-CAGCGGCGGCGGCUc -3'
miRNA:   3'- cuAGCgGGCGGuGUCGCCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 17527 0.74 0.091231
Target:  5'- cGUUGCCCGuCCACAuguuggcgccacccGUGG-GGCGGCCg -3'
miRNA:   3'- cUAGCGGGC-GGUGU--------------CGCCgCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 50866 0.66 0.358245
Target:  5'- -cUCGCUugugaGCCAgGGUGGCGGCucggacuugcucgauGGUCa -3'
miRNA:   3'- cuAGCGGg----CGGUgUCGCCGCCG---------------CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.