miRNA display CGI


Results 61 - 80 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18433 3' -64.6 NC_004681.1 + 51839 0.69 0.223455
Target:  5'- -cUUGCCCGCgC-CGG-GGCGGCcGCCg -3'
miRNA:   3'- cuAGCGGGCG-GuGUCgCCGCCGcCGG- -5'
18433 3' -64.6 NC_004681.1 + 25919 0.69 0.223455
Target:  5'- gGAUUGCCaugagcaCCGCGGUGGCGGUgaauGGCUu -3'
miRNA:   3'- -CUAGCGGgc-----GGUGUCGCCGCCG----CCGG- -5'
18433 3' -64.6 NC_004681.1 + 66286 0.69 0.227268
Target:  5'- -cUUGCagCGCCACAucugguacaugcccGCGGUGGUGGCg -3'
miRNA:   3'- cuAGCGg-GCGGUGU--------------CGCCGCCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 16214 0.69 0.234496
Target:  5'- cGAUa-CCCGaCACAGCcGUGGCGGCUn -3'
miRNA:   3'- -CUAgcGGGCgGUGUCGcCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 31577 0.69 0.234496
Target:  5'- --aUGCCaagCGCCGCAGCGaauugcguuGCGGUcaGGCCg -3'
miRNA:   3'- cuaGCGG---GCGGUGUCGC---------CGCCG--CCGG- -5'
18433 3' -64.6 NC_004681.1 + 49435 0.7 0.188247
Target:  5'- --gCGCCCGCgGCGccgccGUGGCGGaCGGUg -3'
miRNA:   3'- cuaGCGGGCGgUGU-----CGCCGCC-GCCGg -5'
18433 3' -64.6 NC_004681.1 + 26967 0.7 0.188247
Target:  5'- -cUCG-CCGCCAUAgGUGGCGGUGGggaCCg -3'
miRNA:   3'- cuAGCgGGCGGUGU-CGCCGCCGCC---GG- -5'
18433 3' -64.6 NC_004681.1 + 9204 0.7 0.183635
Target:  5'- --aCGCCagaGCCcgagcCAGCGGCGccggugacgacGCGGCCa -3'
miRNA:   3'- cuaGCGGg--CGGu----GUCGCCGC-----------CGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 17527 0.74 0.091231
Target:  5'- cGUUGCCCGuCCACAuguuggcgccacccGUGG-GGCGGCCg -3'
miRNA:   3'- cUAGCGGGC-GGUGU--------------CGCCgCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 47202 0.74 0.091952
Target:  5'- -cUCG-UCGCU-CAGCGGCGGCGGCUc -3'
miRNA:   3'- cuAGCgGGCGGuGUCGCCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 7446 0.74 0.091952
Target:  5'- gGGagGCuUCGCCGCGGCGGCGG-GGUCa -3'
miRNA:   3'- -CUagCG-GGCGGUGUCGCCGCCgCCGG- -5'
18433 3' -64.6 NC_004681.1 + 34848 0.73 0.107275
Target:  5'- -cUUGCCCcCUACuucgacaAGgGGCGGCGGCCg -3'
miRNA:   3'- cuAGCGGGcGGUG-------UCgCCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 60702 0.73 0.110385
Target:  5'- -cUCGUCaaguGCCGCAGCGGCGGCcucGUCg -3'
miRNA:   3'- cuAGCGGg---CGGUGUCGCCGCCGc--CGG- -5'
18433 3' -64.6 NC_004681.1 + 58776 0.72 0.134628
Target:  5'- cGUCcCCCGCCAuCAggcagguguggcccGCGGCgcaGGCGGCCg -3'
miRNA:   3'- cUAGcGGGCGGU-GU--------------CGCCG---CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 41928 0.71 0.150217
Target:  5'- aGAUCgGCCCGCUGCAGggaaaugcccCGGgaGGCGGCg -3'
miRNA:   3'- -CUAG-CGGGCGGUGUC----------GCCg-CCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 16448 0.71 0.158013
Target:  5'- cGUCGCcacccaCCGCCGCAGCGGaGaUGGCCu -3'
miRNA:   3'- cUAGCG------GGCGGUGUCGCCgCcGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 61769 0.71 0.170394
Target:  5'- -cUCGgCgGCgGCcuccGCGGCGGCGGCUu -3'
miRNA:   3'- cuAGCgGgCGgUGu---CGCCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 16188 0.7 0.179123
Target:  5'- --gUGCgCGCCGCGGUGGUgacgccaccgagGGCGGCa -3'
miRNA:   3'- cuaGCGgGCGGUGUCGCCG------------CCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 69023 0.7 0.183635
Target:  5'- -cUCGaa-GUCuuCGGUGGCGGCGGCCg -3'
miRNA:   3'- cuAGCgggCGGu-GUCGCCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 14576 0.7 0.183635
Target:  5'- aGcgCGCCCuGCU-CGGCGGaGGCGGCg -3'
miRNA:   3'- -CuaGCGGG-CGGuGUCGCCgCCGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.