miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18433 3' -64.6 NC_004681.1 + 2229 0.69 0.212859
Target:  5'- ----aCCUGCCGgguuaccacauCAGCGGgGGUGGCCa -3'
miRNA:   3'- cuagcGGGCGGU-----------GUCGCCgCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 21307 0.69 0.211824
Target:  5'- gGGUCuGCuCCGCCAgAGUGGCGacgcuguccauuCGGCCg -3'
miRNA:   3'- -CUAG-CG-GGCGGUgUCGCCGCc-----------GCCGG- -5'
18433 3' -64.6 NC_004681.1 + 16188 0.7 0.179123
Target:  5'- --gUGCgCGCCGCGGUGGUgacgccaccgagGGCGGCa -3'
miRNA:   3'- cuaGCGgGCGGUGUCGCCG------------CCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 7446 0.74 0.091952
Target:  5'- gGGagGCuUCGCCGCGGCGGCGG-GGUCa -3'
miRNA:   3'- -CUagCG-GGCGGUGUCGCCGCCgCCGG- -5'
18433 3' -64.6 NC_004681.1 + 41678 0.68 0.251316
Target:  5'- cAUCGCCgugCGCUGCcugcggGGUGGCgcugcauGGCGGCCg -3'
miRNA:   3'- cUAGCGG---GCGGUG------UCGCCG-------CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 16214 0.69 0.234496
Target:  5'- cGAUa-CCCGaCACAGCcGUGGCGGCUn -3'
miRNA:   3'- -CUAgcGGGCgGUGUCGcCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 24980 0.7 0.19296
Target:  5'- gGGUCGCCgcccuCGCCAUuGCuGGUgagggagccuuGGCGGCCg -3'
miRNA:   3'- -CUAGCGG-----GCGGUGuCG-CCG-----------CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 47202 0.74 0.091952
Target:  5'- -cUCG-UCGCU-CAGCGGCGGCGGCUc -3'
miRNA:   3'- cuAGCgGGCGGuGUCGCCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 66286 0.69 0.227268
Target:  5'- -cUUGCagCGCCACAucugguacaugcccGCGGUGGUGGCg -3'
miRNA:   3'- cuAGCGg-GCGGUGU--------------CGCCGCCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 17527 0.74 0.091231
Target:  5'- cGUUGCCCGuCCACAuguuggcgccacccGUGG-GGCGGCCg -3'
miRNA:   3'- cUAGCGGGC-GGUGU--------------CGCCgCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 65714 0.7 0.202698
Target:  5'- -cUCGCCaCGCCACuuGGCGGCGaagcagagaacGCGaGUCg -3'
miRNA:   3'- cuAGCGG-GCGGUG--UCGCCGC-----------CGC-CGG- -5'
18433 3' -64.6 NC_004681.1 + 14654 0.69 0.218102
Target:  5'- --gCGgCCGUgGUGGCGGUGGCGGCg -3'
miRNA:   3'- cuaGCgGGCGgUGUCGCCGCCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 26967 0.7 0.188247
Target:  5'- -cUCG-CCGCCAUAgGUGGCGGUGGggaCCg -3'
miRNA:   3'- cuAGCgGGCGGUGU-CGCCGCCGCC---GG- -5'
18433 3' -64.6 NC_004681.1 + 69023 0.7 0.183635
Target:  5'- -cUCGaa-GUCuuCGGUGGCGGCGGCCg -3'
miRNA:   3'- cuAGCgggCGGu-GUCGCCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 41928 0.71 0.150217
Target:  5'- aGAUCgGCCCGCUGCAGggaaaugcccCGGgaGGCGGCg -3'
miRNA:   3'- -CUAG-CGGGCGGUGUC----------GCCg-CCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 34848 0.73 0.107275
Target:  5'- -cUUGCCCcCUACuucgacaAGgGGCGGCGGCCg -3'
miRNA:   3'- cuAGCGGGcGGUG-------UCgCCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 40255 0.68 0.276776
Target:  5'- cAUCGCCuCGau-CuGCGGCGucGCGGCCu -3'
miRNA:   3'- cUAGCGG-GCgguGuCGCCGC--CGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 30342 0.68 0.251913
Target:  5'- --cCGgCCGCCGCcGCuGUGGCGGgCg -3'
miRNA:   3'- cuaGCgGGCGGUGuCGcCGCCGCCgG- -5'
18433 3' -64.6 NC_004681.1 + 12485 0.68 0.245992
Target:  5'- ---aGCgUCGCCGCGGUGGUGGU-GCCa -3'
miRNA:   3'- cuagCG-GGCGGUGUCGCCGCCGcCGG- -5'
18433 3' -64.6 NC_004681.1 + 31577 0.69 0.234496
Target:  5'- --aUGCCaagCGCCGCAGCGaauugcguuGCGGUcaGGCCg -3'
miRNA:   3'- cuaGCGG---GCGGUGUCGC---------CGCCG--CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.