miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18433 3' -64.6 NC_004681.1 + 69023 0.7 0.183635
Target:  5'- -cUCGaa-GUCuuCGGUGGCGGCGGCCg -3'
miRNA:   3'- cuAGCgggCGGu-GUCGCCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 5916 0.67 0.296681
Target:  5'- --gCGCUucucgUGCCGCAGUaccaGGUuggGGCGGCCa -3'
miRNA:   3'- cuaGCGG-----GCGGUGUCG----CCG---CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 16188 0.7 0.179123
Target:  5'- --gUGCgCGCCGCGGUGGUgacgccaccgagGGCGGCa -3'
miRNA:   3'- cuaGCGgGCGGUGUCGCCG------------CCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 42353 0.7 0.188247
Target:  5'- --gCGCCUuCCGCgGGCGGgaccagcagcuCGGCGGCCg -3'
miRNA:   3'- cuaGCGGGcGGUG-UCGCC-----------GCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 7998 0.69 0.212859
Target:  5'- -cUCGgCgGCUuccucggaGGCGGCGGCGGUCu -3'
miRNA:   3'- cuAGCgGgCGGug------UCGCCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 47046 0.66 0.355119
Target:  5'- cAUCGCCuUGUCGCc-CGaGuCGGCGGCCu -3'
miRNA:   3'- cUAGCGG-GCGGUGucGC-C-GCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 57902 0.67 0.317681
Target:  5'- -uUCGCCa-CCuCGGCGGCG-CGGCg -3'
miRNA:   3'- cuAGCGGgcGGuGUCGCCGCcGCCGg -5'
18433 3' -64.6 NC_004681.1 + 50866 0.66 0.358245
Target:  5'- -cUCGCUugugaGCCAgGGUGGCGGCucggacuugcucgauGGUCa -3'
miRNA:   3'- cuAGCGGg----CGGUgUCGCCGCCG---------------CCGG- -5'
18433 3' -64.6 NC_004681.1 + 40255 0.68 0.276776
Target:  5'- cAUCGCCuCGau-CuGCGGCGucGCGGCCu -3'
miRNA:   3'- cUAGCGG-GCgguGuCGCCGC--CGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 30342 0.68 0.251913
Target:  5'- --cCGgCCGCCGCcGCuGUGGCGGgCg -3'
miRNA:   3'- cuaGCgGGCGGUGuCGcCGCCGCCgG- -5'
18433 3' -64.6 NC_004681.1 + 12485 0.68 0.245992
Target:  5'- ---aGCgUCGCCGCGGUGGUGGU-GCCa -3'
miRNA:   3'- cuagCG-GGCGGUGUCGCCGCCGcCGG- -5'
18433 3' -64.6 NC_004681.1 + 31577 0.69 0.234496
Target:  5'- --aUGCCaagCGCCGCAGCGaauugcguuGCGGUcaGGCCg -3'
miRNA:   3'- cuaGCGG---GCGGUGUCGC---------CGCCG--CCGG- -5'
18433 3' -64.6 NC_004681.1 + 14654 0.69 0.218102
Target:  5'- --gCGgCCGUgGUGGCGGUGGCGGCg -3'
miRNA:   3'- cuaGCgGGCGgUGUCGCCGCCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 61200 0.66 0.335271
Target:  5'- ---gGCCUGCCcaccuugggugaaccGCAGCucggGGuCGGCGGUCa -3'
miRNA:   3'- cuagCGGGCGG---------------UGUCG----CC-GCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 18370 0.68 0.257952
Target:  5'- --gCGCCauCGaCAUGGCaggccaGGCGGCGGCCg -3'
miRNA:   3'- cuaGCGG--GCgGUGUCG------CCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 26449 0.68 0.257952
Target:  5'- -uUCGCgCCGCCAgAGUacGGCuaCGGCCu -3'
miRNA:   3'- cuAGCG-GGCGGUgUCG--CCGccGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 69509 0.73 0.125615
Target:  5'- aGGUgCGCCaCGCCgugugcucACuGCuGCGGCGGCCg -3'
miRNA:   3'- -CUA-GCGG-GCGG--------UGuCGcCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 23684 0.68 0.264108
Target:  5'- --gCGCCCGCCuCcGCGGacauaGaGUGGCCc -3'
miRNA:   3'- cuaGCGGGCGGuGuCGCCg----C-CGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 28127 0.7 0.179123
Target:  5'- ---gGcCCCGCgggcaACGGCGGCGGCGGaUCg -3'
miRNA:   3'- cuagC-GGGCGg----UGUCGCCGCCGCC-GG- -5'
18433 3' -64.6 NC_004681.1 + 70452 0.7 0.188247
Target:  5'- cAUC-UCCGCCAUGGUGGUccuGCGGCCg -3'
miRNA:   3'- cUAGcGGGCGGUGUCGCCGc--CGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.