miRNA display CGI


Results 61 - 80 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18433 3' -64.6 NC_004681.1 + 26217 0.78 0.04781
Target:  5'- -cUgGCCCGCCACGGCGGCGaugcccgcccccuacGCGGUg -3'
miRNA:   3'- cuAgCGGGCGGUGUCGCCGC---------------CGCCGg -5'
18433 3' -64.6 NC_004681.1 + 69509 0.73 0.125615
Target:  5'- aGGUgCGCCaCGCCgugugcucACuGCuGCGGCGGCCg -3'
miRNA:   3'- -CUA-GCGG-GCGG--------UGuCGcCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 25249 0.73 0.113286
Target:  5'- --gCGCCCGCgGCGGCGGUugGGUGcGCUu -3'
miRNA:   3'- cuaGCGGGCGgUGUCGCCG--CCGC-CGG- -5'
18433 3' -64.6 NC_004681.1 + 35790 0.71 0.170394
Target:  5'- -uUCGUCCGacuCCAUuGCGGgGcGCGGCCa -3'
miRNA:   3'- cuAGCGGGC---GGUGuCGCCgC-CGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 26449 0.68 0.257952
Target:  5'- -uUCGCgCCGCCAgAGUacGGCuaCGGCCu -3'
miRNA:   3'- cuAGCG-GGCGGUgUCG--CCGccGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 32101 0.67 0.324924
Target:  5'- aGGUCGUcaCCGgCAUccaggaAGCGGUcaccgcGGCGGCCc -3'
miRNA:   3'- -CUAGCG--GGCgGUG------UCGCCG------CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 30027 0.67 0.324924
Target:  5'- cGUCGCaaccgucaUCGCCGCcGCGGCcauCGGCCu -3'
miRNA:   3'- cUAGCG--------GGCGGUGuCGCCGcc-GCCGG- -5'
18433 3' -64.6 NC_004681.1 + 17888 0.66 0.332291
Target:  5'- aGAagGaaUuCCugGGCGGCGGCGGCg -3'
miRNA:   3'- -CUagCggGcGGugUCGCCGCCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 61397 0.66 0.339779
Target:  5'- aGGUCGgCgGCaACAGCaacGGgGGCGGCa -3'
miRNA:   3'- -CUAGCgGgCGgUGUCG---CCgCCGCCGg -5'
18433 3' -64.6 NC_004681.1 + 13129 0.66 0.339779
Target:  5'- --cUGCCCGCCACcgcccuucGUGGCacGGCGGgUa -3'
miRNA:   3'- cuaGCGGGCGGUGu-------CGCCG--CCGCCgG- -5'
18433 3' -64.6 NC_004681.1 + 32632 0.66 0.355119
Target:  5'- --aCGUUCGCCACacucucuucacGGUGGCGGggaccugGGCCg -3'
miRNA:   3'- cuaGCGGGCGGUG-----------UCGCCGCCg------CCGG- -5'
18433 3' -64.6 NC_004681.1 + 60196 0.66 0.36218
Target:  5'- uGAUCGgcaCCCGCCGC-GCGGggaucacgccuagUGGCGGaCUu -3'
miRNA:   3'- -CUAGC---GGGCGGUGuCGCC-------------GCCGCC-GG- -5'
18433 3' -64.6 NC_004681.1 + 5194 0.66 0.36297
Target:  5'- --gCGCCCGCCAUGGCcGaGCuGUcGCCa -3'
miRNA:   3'- cuaGCGGGCGGUGUCG-C-CGcCGcCGG- -5'
18433 3' -64.6 NC_004681.1 + 1361 0.66 0.36297
Target:  5'- --aUGUUCGCCGuguuCuGCgaGGCGGUGGCCa -3'
miRNA:   3'- cuaGCGGGCGGU----GuCG--CCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 18370 0.68 0.257952
Target:  5'- --gCGCCauCGaCAUGGCaggccaGGCGGCGGCCg -3'
miRNA:   3'- cuaGCGG--GCgGUGUCG------CCGCCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 57804 0.68 0.250125
Target:  5'- --gCGCCgCGCCGCcgagguggcgaaggAGCGG-GGCuGGCCc -3'
miRNA:   3'- cuaGCGG-GCGGUG--------------UCGCCgCCG-CCGG- -5'
18433 3' -64.6 NC_004681.1 + 64921 0.69 0.240187
Target:  5'- --gCGCCCGCCugGaGCacgaGGUGGCGacgcGCCu -3'
miRNA:   3'- cuaGCGGGCGGugU-CG----CCGCCGC----CGG- -5'
18433 3' -64.6 NC_004681.1 + 14470 0.69 0.239613
Target:  5'- --gCGCgCGCCGCcuccgccgagcagGGCGcGCuGGUGGCCg -3'
miRNA:   3'- cuaGCGgGCGGUG-------------UCGC-CG-CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 16105 0.69 0.233934
Target:  5'- gGcgCGCacagCCGCCACGGCugugucggguaucGGCuucgcggcgcuGGCGGCCa -3'
miRNA:   3'- -CuaGCG----GGCGGUGUCG-------------CCG-----------CCGCCGG- -5'
18433 3' -64.6 NC_004681.1 + 59177 0.69 0.22892
Target:  5'- cGUCGCCaccuauGUCACGGaCGGCcucccgGGCGGCUc -3'
miRNA:   3'- cUAGCGGg-----CGGUGUC-GCCG------CCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.