miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18434 3' -56.9 NC_004681.1 + 60665 0.66 0.757607
Target:  5'- aCGuuCGUCgGCCAGcGGC-CCGAg-GCg -3'
miRNA:   3'- -GCuuGCAGgUGGUC-CCGuGGCUgaCG- -5'
18434 3' -56.9 NC_004681.1 + 23389 0.66 0.757607
Target:  5'- --cACGUUCGCCAGuGGCuccauuACCGACa-- -3'
miRNA:   3'- gcuUGCAGGUGGUC-CCG------UGGCUGacg -5'
18434 3' -56.9 NC_004681.1 + 2678 0.66 0.757607
Target:  5'- cCGAGCGU-CACU--GGCG-CGACUGCu -3'
miRNA:   3'- -GCUUGCAgGUGGucCCGUgGCUGACG- -5'
18434 3' -56.9 NC_004681.1 + 71586 0.66 0.757607
Target:  5'- gCGAguAUGaCCcgggaCAGGGCACCGuguCUGCc -3'
miRNA:   3'- -GCU--UGCaGGug---GUCCCGUGGCu--GACG- -5'
18434 3' -56.9 NC_004681.1 + 7489 0.66 0.75662
Target:  5'- uCGGACGcUCCggucgauGCCuGGGC-CUGGgUGCg -3'
miRNA:   3'- -GCUUGC-AGG-------UGGuCCCGuGGCUgACG- -5'
18434 3' -56.9 NC_004681.1 + 35190 0.66 0.747686
Target:  5'- gCGAcuACGUCUuccuggAUCAGGagcGCACCGAgcCUGCc -3'
miRNA:   3'- -GCU--UGCAGG------UGGUCC---CGUGGCU--GACG- -5'
18434 3' -56.9 NC_004681.1 + 16685 0.66 0.747686
Target:  5'- ----gGUCgACCGGGGaCGCCGGggGCu -3'
miRNA:   3'- gcuugCAGgUGGUCCC-GUGGCUgaCG- -5'
18434 3' -56.9 NC_004681.1 + 49774 0.66 0.747686
Target:  5'- -cAugGUCUgcgGCCAcGGCACCaagGGCUGCc -3'
miRNA:   3'- gcUugCAGG---UGGUcCCGUGG---CUGACG- -5'
18434 3' -56.9 NC_004681.1 + 31381 0.66 0.747686
Target:  5'- aCGAACGgugagggCUACgGGGcGCGCgacgGACUGCc -3'
miRNA:   3'- -GCUUGCa------GGUGgUCC-CGUGg---CUGACG- -5'
18434 3' -56.9 NC_004681.1 + 35379 0.66 0.747686
Target:  5'- --uGCGUCCaagccaccggugGCCGgauuccucgacGGGCACCcACUGCu -3'
miRNA:   3'- gcuUGCAGG------------UGGU-----------CCCGUGGcUGACG- -5'
18434 3' -56.9 NC_004681.1 + 41084 0.66 0.744688
Target:  5'- aGGACGUCCACaAGGaGCucggcgaggucaagGCCauGCUGCa -3'
miRNA:   3'- gCUUGCAGGUGgUCC-CG--------------UGGc-UGACG- -5'
18434 3' -56.9 NC_004681.1 + 47906 0.66 0.741681
Target:  5'- aCGAGCaUCCACCAggugggugcguacuuGGGCGCCucgcggguGAaUGCg -3'
miRNA:   3'- -GCUUGcAGGUGGU---------------CCCGUGG--------CUgACG- -5'
18434 3' -56.9 NC_004681.1 + 33408 0.66 0.737657
Target:  5'- gCGAACGUCCcggcguacACCGcGGCG-CGACcgGCg -3'
miRNA:   3'- -GCUUGCAGG--------UGGUcCCGUgGCUGa-CG- -5'
18434 3' -56.9 NC_004681.1 + 17007 0.66 0.737657
Target:  5'- uGGAUGUCauccUCGGuGGCGacacCCGACUGCu -3'
miRNA:   3'- gCUUGCAGgu--GGUC-CCGU----GGCUGACG- -5'
18434 3' -56.9 NC_004681.1 + 22664 0.66 0.737657
Target:  5'- --uACGUCCGCauccccGGCACCGACcaGCc -3'
miRNA:   3'- gcuUGCAGGUGguc---CCGUGGCUGa-CG- -5'
18434 3' -56.9 NC_004681.1 + 41448 0.66 0.72753
Target:  5'- -aAACGUCCuACCAGGGUAU---UUGCg -3'
miRNA:   3'- gcUUGCAGG-UGGUCCCGUGgcuGACG- -5'
18434 3' -56.9 NC_004681.1 + 75545 0.66 0.72753
Target:  5'- aGGGCuGUCCGCauaGGCACgugGGCUGCg -3'
miRNA:   3'- gCUUG-CAGGUGgucCCGUGg--CUGACG- -5'
18434 3' -56.9 NC_004681.1 + 27916 0.66 0.72753
Target:  5'- aCGGAUGcgCCACCGuuGGCGCCG-CcGCg -3'
miRNA:   3'- -GCUUGCa-GGUGGUc-CCGUGGCuGaCG- -5'
18434 3' -56.9 NC_004681.1 + 46289 0.66 0.707024
Target:  5'- gCGucuACGUCCACgGcGGGCAgCCaucCUGCa -3'
miRNA:   3'- -GCu--UGCAGGUGgU-CCCGU-GGcu-GACG- -5'
18434 3' -56.9 NC_004681.1 + 54034 0.66 0.707024
Target:  5'- aCGAGgGUCCGCCGcGcGC-CCGAgaGCc -3'
miRNA:   3'- -GCUUgCAGGUGGUcC-CGuGGCUgaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.