Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18434 | 3' | -56.9 | NC_004681.1 | + | 30464 | 1.12 | 0.000744 |
Target: 5'- aCGAACGUCCACCAGGGCACCGACUGCu -3' miRNA: 3'- -GCUUGCAGGUGGUCCCGUGGCUGACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 7264 | 0.82 | 0.090934 |
Target: 5'- gCGGcCGUCCACCucGGCGCCGAgUGCg -3' miRNA: 3'- -GCUuGCAGGUGGucCCGUGGCUgACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 59606 | 0.77 | 0.196859 |
Target: 5'- gCGGAUGgcgUCACCAGGGCGCuCGACauccgGCa -3' miRNA: 3'- -GCUUGCa--GGUGGUCCCGUG-GCUGa----CG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 7574 | 0.76 | 0.241061 |
Target: 5'- gGAGCGUCCGaacgCAGGGC-CUGGCUGa -3' miRNA: 3'- gCUUGCAGGUg---GUCCCGuGGCUGACg -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 24205 | 0.76 | 0.212542 |
Target: 5'- uGAagGCGUCCGCCAGgcuGGCGCCGGaaccUUGCu -3' miRNA: 3'- gCU--UGCAGGUGGUC---CCGUGGCU----GACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 44629 | 0.75 | 0.272701 |
Target: 5'- -uGAUGagCCACCAGGucuaCACCGACUGCa -3' miRNA: 3'- gcUUGCa-GGUGGUCCc---GUGGCUGACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 33323 | 0.74 | 0.314963 |
Target: 5'- gGGACGUUCGCCguccAGGGCACCcGCccGCa -3' miRNA: 3'- gCUUGCAGGUGG----UCCCGUGGcUGa-CG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 16875 | 0.73 | 0.32247 |
Target: 5'- gGGAUG-CCGCCA-GGCACCGACgUGUc -3' miRNA: 3'- gCUUGCaGGUGGUcCCGUGGCUG-ACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 64102 | 0.73 | 0.321713 |
Target: 5'- gGAGCGUCCaaguuuugugucaGCCGGGGuCACCGAgUaGUg -3' miRNA: 3'- gCUUGCAGG-------------UGGUCCC-GUGGCUgA-CG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 39184 | 0.71 | 0.42273 |
Target: 5'- aGGugG-CCACCAGGGCuuGCaCGGC-GCg -3' miRNA: 3'- gCUugCaGGUGGUCCCG--UG-GCUGaCG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 62795 | 0.71 | 0.469677 |
Target: 5'- ---cCGUCCGCCucauccGGCGCCGACgacGCa -3' miRNA: 3'- gcuuGCAGGUGGuc----CCGUGGCUGa--CG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 57110 | 0.7 | 0.499089 |
Target: 5'- aGAGCGgCUACCGcGGUACCGGCUa- -3' miRNA: 3'- gCUUGCaGGUGGUcCCGUGGCUGAcg -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 32308 | 0.7 | 0.519144 |
Target: 5'- gCGAugGccugcUCCACCAGGuuGCCGAUgaccgUGCc -3' miRNA: 3'- -GCUugC-----AGGUGGUCCcgUGGCUG-----ACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 39430 | 0.7 | 0.48919 |
Target: 5'- gCGGGgGU--GCCAGGcuuccacccGCACCGGCUGCg -3' miRNA: 3'- -GCUUgCAggUGGUCC---------CGUGGCUGACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 49333 | 0.7 | 0.519144 |
Target: 5'- ---cCGUCCGCCAcggcggcgccgcGGGCGCUGACcacuggGCg -3' miRNA: 3'- gcuuGCAGGUGGU------------CCCGUGGCUGa-----CG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 43823 | 0.69 | 0.549796 |
Target: 5'- uGAGCGUgcgaguUCACCgAGGGCGgCGguguACUGCg -3' miRNA: 3'- gCUUGCA------GGUGG-UCCCGUgGC----UGACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 24389 | 0.69 | 0.549796 |
Target: 5'- uGAACGUCUACCAGGuGCuggaaaacGgCGACUucgaGCu -3' miRNA: 3'- gCUUGCAGGUGGUCC-CG--------UgGCUGA----CG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 61151 | 0.69 | 0.549796 |
Target: 5'- aCGAACG-CCGCCgcgacgcccAGGGCAacugggUCGACgGCg -3' miRNA: 3'- -GCUUGCaGGUGG---------UCCCGU------GGCUGaCG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 47117 | 0.69 | 0.560141 |
Target: 5'- uGAGCGacgagaaCGCCgAGGGCcgcGCCGaACUGCg -3' miRNA: 3'- gCUUGCag-----GUGG-UCCCG---UGGC-UGACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 24065 | 0.69 | 0.543617 |
Target: 5'- aGGACGUCUACCAGgucggcgaacguguuGGCAcgcCCGAUccgGCg -3' miRNA: 3'- gCUUGCAGGUGGUC---------------CCGU---GGCUGa--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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