Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18434 | 3' | -56.9 | NC_004681.1 | + | 24389 | 0.69 | 0.549796 |
Target: 5'- uGAACGUCUACCAGGuGCuggaaaacGgCGACUucgaGCu -3' miRNA: 3'- gCUUGCAGGUGGUCC-CG--------UgGCUGA----CG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 61151 | 0.69 | 0.549796 |
Target: 5'- aCGAACG-CCGCCgcgacgcccAGGGCAacugggUCGACgGCg -3' miRNA: 3'- -GCUUGCaGGUGG---------UCCCGU------GGCUGaCG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 47117 | 0.69 | 0.560141 |
Target: 5'- uGAGCGacgagaaCGCCgAGGGCcgcGCCGaACUGCg -3' miRNA: 3'- gCUUGCag-----GUGG-UCCCG---UGGC-UGACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 23454 | 0.68 | 0.633638 |
Target: 5'- aGGAgGUugaCCACCucGGGCGCCugaaGCUGCc -3' miRNA: 3'- gCUUgCA---GGUGGu-CCCGUGGc---UGACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 72592 | 0.68 | 0.630469 |
Target: 5'- aCGGAUGUCUagagcacggagucaACCAuuGCGCgGACUGCa -3' miRNA: 3'- -GCUUGCAGG--------------UGGUccCGUGgCUGACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 36769 | 0.68 | 0.633638 |
Target: 5'- aGcGCGUCUGCCAGGcCGCUGGCccGCc -3' miRNA: 3'- gCuUGCAGGUGGUCCcGUGGCUGa-CG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 19802 | 0.68 | 0.591467 |
Target: 5'- aGAACGgCCGCCA--GUACCGcguGCUGCg -3' miRNA: 3'- gCUUGCaGGUGGUccCGUGGC---UGACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 17639 | 0.67 | 0.695626 |
Target: 5'- gGggUG-CCGCCAGGGagcgugGCCugcauguGGCUGCu -3' miRNA: 3'- gCuuGCaGGUGGUCCCg-----UGG-------CUGACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 23616 | 0.67 | 0.66528 |
Target: 5'- aCGAugACGUCCugCGGguuGGUGCCG-CUGg -3' miRNA: 3'- -GCU--UGCAGGugGUC---CCGUGGCuGACg -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 45611 | 0.67 | 0.66528 |
Target: 5'- --cGCGUCgGCCaAGGGUACCGAg--- -3' miRNA: 3'- gcuUGCAGgUGG-UCCCGUGGCUgacg -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 28154 | 0.67 | 0.686248 |
Target: 5'- uCGAGCGg-CGgCAGcGGCACCGGCa-- -3' miRNA: 3'- -GCUUGCagGUgGUC-CCGUGGCUGacg -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 28337 | 0.67 | 0.686248 |
Target: 5'- aCGAACGauguccucgUCACCccGGCGCCGA-UGCa -3' miRNA: 3'- -GCUUGCa--------GGUGGucCCGUGGCUgACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 21935 | 0.67 | 0.654749 |
Target: 5'- gCGAAccauuCGUCCAagguguaugCGGaGGCGCCGGuCUGCa -3' miRNA: 3'- -GCUU-----GCAGGUg--------GUC-CCGUGGCU-GACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 10757 | 0.67 | 0.686248 |
Target: 5'- aCGGccGCGggCACCgGGGGCGCCaGGCaGCg -3' miRNA: 3'- -GCU--UGCagGUGG-UCCCGUGG-CUGaCG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 6469 | 0.67 | 0.675783 |
Target: 5'- uCGAcaGCG-CCAUCGGgcguGGCGCCcaagGGCUGCa -3' miRNA: 3'- -GCU--UGCaGGUGGUC----CCGUGG----CUGACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 69221 | 0.67 | 0.675783 |
Target: 5'- gCGAGgGag-GCCAGGGCGCgGGCgagGCg -3' miRNA: 3'- -GCUUgCaggUGGUCCCGUGgCUGa--CG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 60665 | 0.66 | 0.757607 |
Target: 5'- aCGuuCGUCgGCCAGcGGC-CCGAg-GCg -3' miRNA: 3'- -GCuuGCAGgUGGUC-CCGuGGCUgaCG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 23389 | 0.66 | 0.757607 |
Target: 5'- --cACGUUCGCCAGuGGCuccauuACCGACa-- -3' miRNA: 3'- gcuUGCAGGUGGUC-CCG------UGGCUGacg -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 7489 | 0.66 | 0.75662 |
Target: 5'- uCGGACGcUCCggucgauGCCuGGGC-CUGGgUGCg -3' miRNA: 3'- -GCUUGC-AGG-------UGGuCCCGuGGCUgACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 49774 | 0.66 | 0.747686 |
Target: 5'- -cAugGUCUgcgGCCAcGGCACCaagGGCUGCc -3' miRNA: 3'- gcUugCAGG---UGGUcCCGUGG---CUGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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