miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18434 3' -56.9 NC_004681.1 + 30464 1.12 0.000744
Target:  5'- aCGAACGUCCACCAGGGCACCGACUGCu -3'
miRNA:   3'- -GCUUGCAGGUGGUCCCGUGGCUGACG- -5'
18434 3' -56.9 NC_004681.1 + 7264 0.82 0.090934
Target:  5'- gCGGcCGUCCACCucGGCGCCGAgUGCg -3'
miRNA:   3'- -GCUuGCAGGUGGucCCGUGGCUgACG- -5'
18434 3' -56.9 NC_004681.1 + 59606 0.77 0.196859
Target:  5'- gCGGAUGgcgUCACCAGGGCGCuCGACauccgGCa -3'
miRNA:   3'- -GCUUGCa--GGUGGUCCCGUG-GCUGa----CG- -5'
18434 3' -56.9 NC_004681.1 + 24205 0.76 0.212542
Target:  5'- uGAagGCGUCCGCCAGgcuGGCGCCGGaaccUUGCu -3'
miRNA:   3'- gCU--UGCAGGUGGUC---CCGUGGCU----GACG- -5'
18434 3' -56.9 NC_004681.1 + 7574 0.76 0.241061
Target:  5'- gGAGCGUCCGaacgCAGGGC-CUGGCUGa -3'
miRNA:   3'- gCUUGCAGGUg---GUCCCGuGGCUGACg -5'
18434 3' -56.9 NC_004681.1 + 44629 0.75 0.272701
Target:  5'- -uGAUGagCCACCAGGucuaCACCGACUGCa -3'
miRNA:   3'- gcUUGCa-GGUGGUCCc---GUGGCUGACG- -5'
18434 3' -56.9 NC_004681.1 + 33323 0.74 0.314963
Target:  5'- gGGACGUUCGCCguccAGGGCACCcGCccGCa -3'
miRNA:   3'- gCUUGCAGGUGG----UCCCGUGGcUGa-CG- -5'
18434 3' -56.9 NC_004681.1 + 64102 0.73 0.321713
Target:  5'- gGAGCGUCCaaguuuugugucaGCCGGGGuCACCGAgUaGUg -3'
miRNA:   3'- gCUUGCAGG-------------UGGUCCC-GUGGCUgA-CG- -5'
18434 3' -56.9 NC_004681.1 + 16875 0.73 0.32247
Target:  5'- gGGAUG-CCGCCA-GGCACCGACgUGUc -3'
miRNA:   3'- gCUUGCaGGUGGUcCCGUGGCUG-ACG- -5'
18434 3' -56.9 NC_004681.1 + 39184 0.71 0.42273
Target:  5'- aGGugG-CCACCAGGGCuuGCaCGGC-GCg -3'
miRNA:   3'- gCUugCaGGUGGUCCCG--UG-GCUGaCG- -5'
18434 3' -56.9 NC_004681.1 + 62795 0.71 0.469677
Target:  5'- ---cCGUCCGCCucauccGGCGCCGACgacGCa -3'
miRNA:   3'- gcuuGCAGGUGGuc----CCGUGGCUGa--CG- -5'
18434 3' -56.9 NC_004681.1 + 39430 0.7 0.48919
Target:  5'- gCGGGgGU--GCCAGGcuuccacccGCACCGGCUGCg -3'
miRNA:   3'- -GCUUgCAggUGGUCC---------CGUGGCUGACG- -5'
18434 3' -56.9 NC_004681.1 + 57110 0.7 0.499089
Target:  5'- aGAGCGgCUACCGcGGUACCGGCUa- -3'
miRNA:   3'- gCUUGCaGGUGGUcCCGUGGCUGAcg -5'
18434 3' -56.9 NC_004681.1 + 32308 0.7 0.519144
Target:  5'- gCGAugGccugcUCCACCAGGuuGCCGAUgaccgUGCc -3'
miRNA:   3'- -GCUugC-----AGGUGGUCCcgUGGCUG-----ACG- -5'
18434 3' -56.9 NC_004681.1 + 49333 0.7 0.519144
Target:  5'- ---cCGUCCGCCAcggcggcgccgcGGGCGCUGACcacuggGCg -3'
miRNA:   3'- gcuuGCAGGUGGU------------CCCGUGGCUGa-----CG- -5'
18434 3' -56.9 NC_004681.1 + 24065 0.69 0.543617
Target:  5'- aGGACGUCUACCAGgucggcgaacguguuGGCAcgcCCGAUccgGCg -3'
miRNA:   3'- gCUUGCAGGUGGUC---------------CCGU---GGCUGa--CG- -5'
18434 3' -56.9 NC_004681.1 + 43823 0.69 0.549796
Target:  5'- uGAGCGUgcgaguUCACCgAGGGCGgCGguguACUGCg -3'
miRNA:   3'- gCUUGCA------GGUGG-UCCCGUgGC----UGACG- -5'
18434 3' -56.9 NC_004681.1 + 61151 0.69 0.549796
Target:  5'- aCGAACG-CCGCCgcgacgcccAGGGCAacugggUCGACgGCg -3'
miRNA:   3'- -GCUUGCaGGUGG---------UCCCGU------GGCUGaCG- -5'
18434 3' -56.9 NC_004681.1 + 24389 0.69 0.549796
Target:  5'- uGAACGUCUACCAGGuGCuggaaaacGgCGACUucgaGCu -3'
miRNA:   3'- gCUUGCAGGUGGUCC-CG--------UgGCUGA----CG- -5'
18434 3' -56.9 NC_004681.1 + 12316 0.69 0.549796
Target:  5'- aGAACGggCCACCGGGGaugCGGC-GCg -3'
miRNA:   3'- gCUUGCa-GGUGGUCCCgugGCUGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.