miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18434 3' -56.9 NC_004681.1 + 11973 0.66 0.707024
Target:  5'- aGAA-GUCCccuCCGuGGGCACCG-CUGg -3'
miRNA:   3'- gCUUgCAGGu--GGU-CCCGUGGCuGACg -5'
18434 3' -56.9 NC_004681.1 + 54034 0.66 0.707024
Target:  5'- aCGAGgGUCCGCCGcGcGC-CCGAgaGCc -3'
miRNA:   3'- -GCUUgCAGGUGGUcC-CGuGGCUgaCG- -5'
18434 3' -56.9 NC_004681.1 + 17639 0.67 0.695626
Target:  5'- gGggUG-CCGCCAGGGagcgugGCCugcauguGGCUGCu -3'
miRNA:   3'- gCuuGCaGGUGGUCCCg-----UGG-------CUGACG- -5'
18434 3' -56.9 NC_004681.1 + 28154 0.67 0.686248
Target:  5'- uCGAGCGg-CGgCAGcGGCACCGGCa-- -3'
miRNA:   3'- -GCUUGCagGUgGUC-CCGUGGCUGacg -5'
18434 3' -56.9 NC_004681.1 + 10757 0.67 0.686248
Target:  5'- aCGGccGCGggCACCgGGGGCGCCaGGCaGCg -3'
miRNA:   3'- -GCU--UGCagGUGG-UCCCGUGG-CUGaCG- -5'
18434 3' -56.9 NC_004681.1 + 28337 0.67 0.686248
Target:  5'- aCGAACGauguccucgUCACCccGGCGCCGA-UGCa -3'
miRNA:   3'- -GCUUGCa--------GGUGGucCCGUGGCUgACG- -5'
18434 3' -56.9 NC_004681.1 + 6469 0.67 0.675783
Target:  5'- uCGAcaGCG-CCAUCGGgcguGGCGCCcaagGGCUGCa -3'
miRNA:   3'- -GCU--UGCaGGUGGUC----CCGUGG----CUGACG- -5'
18434 3' -56.9 NC_004681.1 + 69221 0.67 0.675783
Target:  5'- gCGAGgGag-GCCAGGGCGCgGGCgagGCg -3'
miRNA:   3'- -GCUUgCaggUGGUCCCGUGgCUGa--CG- -5'
18434 3' -56.9 NC_004681.1 + 23616 0.67 0.66528
Target:  5'- aCGAugACGUCCugCGGguuGGUGCCG-CUGg -3'
miRNA:   3'- -GCU--UGCAGGugGUC---CCGUGGCuGACg -5'
18434 3' -56.9 NC_004681.1 + 45611 0.67 0.66528
Target:  5'- --cGCGUCgGCCaAGGGUACCGAg--- -3'
miRNA:   3'- gcuUGCAGgUGG-UCCCGUGGCUgacg -5'
18434 3' -56.9 NC_004681.1 + 21935 0.67 0.654749
Target:  5'- gCGAAccauuCGUCCAagguguaugCGGaGGCGCCGGuCUGCa -3'
miRNA:   3'- -GCUU-----GCAGGUg--------GUC-CCGUGGCU-GACG- -5'
18434 3' -56.9 NC_004681.1 + 23454 0.68 0.633638
Target:  5'- aGGAgGUugaCCACCucGGGCGCCugaaGCUGCc -3'
miRNA:   3'- gCUUgCA---GGUGGu-CCCGUGGc---UGACG- -5'
18434 3' -56.9 NC_004681.1 + 36769 0.68 0.633638
Target:  5'- aGcGCGUCUGCCAGGcCGCUGGCccGCc -3'
miRNA:   3'- gCuUGCAGGUGGUCCcGUGGCUGa-CG- -5'
18434 3' -56.9 NC_004681.1 + 72592 0.68 0.630469
Target:  5'- aCGGAUGUCUagagcacggagucaACCAuuGCGCgGACUGCa -3'
miRNA:   3'- -GCUUGCAGG--------------UGGUccCGUGgCUGACG- -5'
18434 3' -56.9 NC_004681.1 + 19802 0.68 0.591467
Target:  5'- aGAACGgCCGCCA--GUACCGcguGCUGCg -3'
miRNA:   3'- gCUUGCaGGUGGUccCGUGGC---UGACG- -5'
18434 3' -56.9 NC_004681.1 + 42344 0.69 0.580984
Target:  5'- gCGGGCGggaCCAgCAGcucGGCgGCCGugUGCg -3'
miRNA:   3'- -GCUUGCa--GGUgGUC---CCG-UGGCugACG- -5'
18434 3' -56.9 NC_004681.1 + 28494 0.69 0.570539
Target:  5'- gGggUGaCCGCCAGGcCAUUGACUGg -3'
miRNA:   3'- gCuuGCaGGUGGUCCcGUGGCUGACg -5'
18434 3' -56.9 NC_004681.1 + 47117 0.69 0.560141
Target:  5'- uGAGCGacgagaaCGCCgAGGGCcgcGCCGaACUGCg -3'
miRNA:   3'- gCUUGCag-----GUGG-UCCCG---UGGC-UGACG- -5'
18434 3' -56.9 NC_004681.1 + 43823 0.69 0.549796
Target:  5'- uGAGCGUgcgaguUCACCgAGGGCGgCGguguACUGCg -3'
miRNA:   3'- gCUUGCA------GGUGG-UCCCGUgGC----UGACG- -5'
18434 3' -56.9 NC_004681.1 + 61151 0.69 0.549796
Target:  5'- aCGAACG-CCGCCgcgacgcccAGGGCAacugggUCGACgGCg -3'
miRNA:   3'- -GCUUGCaGGUGG---------UCCCGU------GGCUGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.