miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18434 3' -56.9 NC_004681.1 + 2678 0.66 0.757607
Target:  5'- cCGAGCGU-CACU--GGCG-CGACUGCu -3'
miRNA:   3'- -GCUUGCAgGUGGucCCGUgGCUGACG- -5'
18434 3' -56.9 NC_004681.1 + 6469 0.67 0.675783
Target:  5'- uCGAcaGCG-CCAUCGGgcguGGCGCCcaagGGCUGCa -3'
miRNA:   3'- -GCU--UGCaGGUGGUC----CCGUGG----CUGACG- -5'
18434 3' -56.9 NC_004681.1 + 7264 0.82 0.090934
Target:  5'- gCGGcCGUCCACCucGGCGCCGAgUGCg -3'
miRNA:   3'- -GCUuGCAGGUGGucCCGUGGCUgACG- -5'
18434 3' -56.9 NC_004681.1 + 7489 0.66 0.75662
Target:  5'- uCGGACGcUCCggucgauGCCuGGGC-CUGGgUGCg -3'
miRNA:   3'- -GCUUGC-AGG-------UGGuCCCGuGGCUgACG- -5'
18434 3' -56.9 NC_004681.1 + 7574 0.76 0.241061
Target:  5'- gGAGCGUCCGaacgCAGGGC-CUGGCUGa -3'
miRNA:   3'- gCUUGCAGGUg---GUCCCGuGGCUGACg -5'
18434 3' -56.9 NC_004681.1 + 10757 0.67 0.686248
Target:  5'- aCGGccGCGggCACCgGGGGCGCCaGGCaGCg -3'
miRNA:   3'- -GCU--UGCagGUGG-UCCCGUGG-CUGaCG- -5'
18434 3' -56.9 NC_004681.1 + 11973 0.66 0.707024
Target:  5'- aGAA-GUCCccuCCGuGGGCACCG-CUGg -3'
miRNA:   3'- gCUUgCAGGu--GGU-CCCGUGGCuGACg -5'
18434 3' -56.9 NC_004681.1 + 12316 0.69 0.549796
Target:  5'- aGAACGggCCACCGGGGaugCGGC-GCg -3'
miRNA:   3'- gCUUGCa-GGUGGUCCCgugGCUGaCG- -5'
18434 3' -56.9 NC_004681.1 + 16179 0.66 0.707024
Target:  5'- gCGGugGUgacgCCACCgAGGGCGgCaGuCUGCg -3'
miRNA:   3'- -GCUugCA----GGUGG-UCCCGUgG-CuGACG- -5'
18434 3' -56.9 NC_004681.1 + 16685 0.66 0.747686
Target:  5'- ----gGUCgACCGGGGaCGCCGGggGCu -3'
miRNA:   3'- gcuugCAGgUGGUCCC-GUGGCUgaCG- -5'
18434 3' -56.9 NC_004681.1 + 16875 0.73 0.32247
Target:  5'- gGGAUG-CCGCCA-GGCACCGACgUGUc -3'
miRNA:   3'- gCUUGCaGGUGGUcCCGUGGCUG-ACG- -5'
18434 3' -56.9 NC_004681.1 + 17007 0.66 0.737657
Target:  5'- uGGAUGUCauccUCGGuGGCGacacCCGACUGCu -3'
miRNA:   3'- gCUUGCAGgu--GGUC-CCGU----GGCUGACG- -5'
18434 3' -56.9 NC_004681.1 + 17639 0.67 0.695626
Target:  5'- gGggUG-CCGCCAGGGagcgugGCCugcauguGGCUGCu -3'
miRNA:   3'- gCuuGCaGGUGGUCCCg-----UGG-------CUGACG- -5'
18434 3' -56.9 NC_004681.1 + 19802 0.68 0.591467
Target:  5'- aGAACGgCCGCCA--GUACCGcguGCUGCg -3'
miRNA:   3'- gCUUGCaGGUGGUccCGUGGC---UGACG- -5'
18434 3' -56.9 NC_004681.1 + 21935 0.67 0.654749
Target:  5'- gCGAAccauuCGUCCAagguguaugCGGaGGCGCCGGuCUGCa -3'
miRNA:   3'- -GCUU-----GCAGGUg--------GUC-CCGUGGCU-GACG- -5'
18434 3' -56.9 NC_004681.1 + 22664 0.66 0.737657
Target:  5'- --uACGUCCGCauccccGGCACCGACcaGCc -3'
miRNA:   3'- gcuUGCAGGUGguc---CCGUGGCUGa-CG- -5'
18434 3' -56.9 NC_004681.1 + 23389 0.66 0.757607
Target:  5'- --cACGUUCGCCAGuGGCuccauuACCGACa-- -3'
miRNA:   3'- gcuUGCAGGUGGUC-CCG------UGGCUGacg -5'
18434 3' -56.9 NC_004681.1 + 23454 0.68 0.633638
Target:  5'- aGGAgGUugaCCACCucGGGCGCCugaaGCUGCc -3'
miRNA:   3'- gCUUgCA---GGUGGu-CCCGUGGc---UGACG- -5'
18434 3' -56.9 NC_004681.1 + 23616 0.67 0.66528
Target:  5'- aCGAugACGUCCugCGGguuGGUGCCG-CUGg -3'
miRNA:   3'- -GCU--UGCAGGugGUC---CCGUGGCuGACg -5'
18434 3' -56.9 NC_004681.1 + 24065 0.69 0.543617
Target:  5'- aGGACGUCUACCAGgucggcgaacguguuGGCAcgcCCGAUccgGCg -3'
miRNA:   3'- gCUUGCAGGUGGUC---------------CCGU---GGCUGa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.