miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18434 3' -56.9 NC_004681.1 + 24205 0.76 0.212542
Target:  5'- uGAagGCGUCCGCCAGgcuGGCGCCGGaaccUUGCu -3'
miRNA:   3'- gCU--UGCAGGUGGUC---CCGUGGCU----GACG- -5'
18434 3' -56.9 NC_004681.1 + 24389 0.69 0.549796
Target:  5'- uGAACGUCUACCAGGuGCuggaaaacGgCGACUucgaGCu -3'
miRNA:   3'- gCUUGCAGGUGGUCC-CG--------UgGCUGA----CG- -5'
18434 3' -56.9 NC_004681.1 + 27916 0.66 0.72753
Target:  5'- aCGGAUGcgCCACCGuuGGCGCCG-CcGCg -3'
miRNA:   3'- -GCUUGCa-GGUGGUc-CCGUGGCuGaCG- -5'
18434 3' -56.9 NC_004681.1 + 28154 0.67 0.686248
Target:  5'- uCGAGCGg-CGgCAGcGGCACCGGCa-- -3'
miRNA:   3'- -GCUUGCagGUgGUC-CCGUGGCUGacg -5'
18434 3' -56.9 NC_004681.1 + 28337 0.67 0.686248
Target:  5'- aCGAACGauguccucgUCACCccGGCGCCGA-UGCa -3'
miRNA:   3'- -GCUUGCa--------GGUGGucCCGUGGCUgACG- -5'
18434 3' -56.9 NC_004681.1 + 28494 0.69 0.570539
Target:  5'- gGggUGaCCGCCAGGcCAUUGACUGg -3'
miRNA:   3'- gCuuGCaGGUGGUCCcGUGGCUGACg -5'
18434 3' -56.9 NC_004681.1 + 30464 1.12 0.000744
Target:  5'- aCGAACGUCCACCAGGGCACCGACUGCu -3'
miRNA:   3'- -GCUUGCAGGUGGUCCCGUGGCUGACG- -5'
18434 3' -56.9 NC_004681.1 + 31381 0.66 0.747686
Target:  5'- aCGAACGgugagggCUACgGGGcGCGCgacgGACUGCc -3'
miRNA:   3'- -GCUUGCa------GGUGgUCC-CGUGg---CUGACG- -5'
18434 3' -56.9 NC_004681.1 + 32308 0.7 0.519144
Target:  5'- gCGAugGccugcUCCACCAGGuuGCCGAUgaccgUGCc -3'
miRNA:   3'- -GCUugC-----AGGUGGUCCcgUGGCUG-----ACG- -5'
18434 3' -56.9 NC_004681.1 + 33323 0.74 0.314963
Target:  5'- gGGACGUUCGCCguccAGGGCACCcGCccGCa -3'
miRNA:   3'- gCUUGCAGGUGG----UCCCGUGGcUGa-CG- -5'
18434 3' -56.9 NC_004681.1 + 33408 0.66 0.737657
Target:  5'- gCGAACGUCCcggcguacACCGcGGCG-CGACcgGCg -3'
miRNA:   3'- -GCUUGCAGG--------UGGUcCCGUgGCUGa-CG- -5'
18434 3' -56.9 NC_004681.1 + 35190 0.66 0.747686
Target:  5'- gCGAcuACGUCUuccuggAUCAGGagcGCACCGAgcCUGCc -3'
miRNA:   3'- -GCU--UGCAGG------UGGUCC---CGUGGCU--GACG- -5'
18434 3' -56.9 NC_004681.1 + 35379 0.66 0.747686
Target:  5'- --uGCGUCCaagccaccggugGCCGgauuccucgacGGGCACCcACUGCu -3'
miRNA:   3'- gcuUGCAGG------------UGGU-----------CCCGUGGcUGACG- -5'
18434 3' -56.9 NC_004681.1 + 36769 0.68 0.633638
Target:  5'- aGcGCGUCUGCCAGGcCGCUGGCccGCc -3'
miRNA:   3'- gCuUGCAGGUGGUCCcGUGGCUGa-CG- -5'
18434 3' -56.9 NC_004681.1 + 39184 0.71 0.42273
Target:  5'- aGGugG-CCACCAGGGCuuGCaCGGC-GCg -3'
miRNA:   3'- gCUugCaGGUGGUCCCG--UG-GCUGaCG- -5'
18434 3' -56.9 NC_004681.1 + 39430 0.7 0.48919
Target:  5'- gCGGGgGU--GCCAGGcuuccacccGCACCGGCUGCg -3'
miRNA:   3'- -GCUUgCAggUGGUCC---------CGUGGCUGACG- -5'
18434 3' -56.9 NC_004681.1 + 41084 0.66 0.744688
Target:  5'- aGGACGUCCACaAGGaGCucggcgaggucaagGCCauGCUGCa -3'
miRNA:   3'- gCUUGCAGGUGgUCC-CG--------------UGGc-UGACG- -5'
18434 3' -56.9 NC_004681.1 + 41448 0.66 0.72753
Target:  5'- -aAACGUCCuACCAGGGUAU---UUGCg -3'
miRNA:   3'- gcUUGCAGG-UGGUCCCGUGgcuGACG- -5'
18434 3' -56.9 NC_004681.1 + 42344 0.69 0.580984
Target:  5'- gCGGGCGggaCCAgCAGcucGGCgGCCGugUGCg -3'
miRNA:   3'- -GCUUGCa--GGUgGUC---CCG-UGGCugACG- -5'
18434 3' -56.9 NC_004681.1 + 43823 0.69 0.549796
Target:  5'- uGAGCGUgcgaguUCACCgAGGGCGgCGguguACUGCg -3'
miRNA:   3'- gCUUGCA------GGUGG-UCCCGUgGC----UGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.