miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18434 3' -56.9 NC_004681.1 + 75545 0.66 0.72753
Target:  5'- aGGGCuGUCCGCauaGGCACgugGGCUGCg -3'
miRNA:   3'- gCUUG-CAGGUGgucCCGUGg--CUGACG- -5'
18434 3' -56.9 NC_004681.1 + 72592 0.68 0.630469
Target:  5'- aCGGAUGUCUagagcacggagucaACCAuuGCGCgGACUGCa -3'
miRNA:   3'- -GCUUGCAGG--------------UGGUccCGUGgCUGACG- -5'
18434 3' -56.9 NC_004681.1 + 71586 0.66 0.757607
Target:  5'- gCGAguAUGaCCcgggaCAGGGCACCGuguCUGCc -3'
miRNA:   3'- -GCU--UGCaGGug---GUCCCGUGGCu--GACG- -5'
18434 3' -56.9 NC_004681.1 + 69221 0.67 0.675783
Target:  5'- gCGAGgGag-GCCAGGGCGCgGGCgagGCg -3'
miRNA:   3'- -GCUUgCaggUGGUCCCGUGgCUGa--CG- -5'
18434 3' -56.9 NC_004681.1 + 64102 0.73 0.321713
Target:  5'- gGAGCGUCCaaguuuugugucaGCCGGGGuCACCGAgUaGUg -3'
miRNA:   3'- gCUUGCAGG-------------UGGUCCC-GUGGCUgA-CG- -5'
18434 3' -56.9 NC_004681.1 + 62795 0.71 0.469677
Target:  5'- ---cCGUCCGCCucauccGGCGCCGACgacGCa -3'
miRNA:   3'- gcuuGCAGGUGGuc----CCGUGGCUGa--CG- -5'
18434 3' -56.9 NC_004681.1 + 61151 0.69 0.549796
Target:  5'- aCGAACG-CCGCCgcgacgcccAGGGCAacugggUCGACgGCg -3'
miRNA:   3'- -GCUUGCaGGUGG---------UCCCGU------GGCUGaCG- -5'
18434 3' -56.9 NC_004681.1 + 60665 0.66 0.757607
Target:  5'- aCGuuCGUCgGCCAGcGGC-CCGAg-GCg -3'
miRNA:   3'- -GCuuGCAGgUGGUC-CCGuGGCUgaCG- -5'
18434 3' -56.9 NC_004681.1 + 59606 0.77 0.196859
Target:  5'- gCGGAUGgcgUCACCAGGGCGCuCGACauccgGCa -3'
miRNA:   3'- -GCUUGCa--GGUGGUCCCGUG-GCUGa----CG- -5'
18434 3' -56.9 NC_004681.1 + 57110 0.7 0.499089
Target:  5'- aGAGCGgCUACCGcGGUACCGGCUa- -3'
miRNA:   3'- gCUUGCaGGUGGUcCCGUGGCUGAcg -5'
18434 3' -56.9 NC_004681.1 + 54034 0.66 0.707024
Target:  5'- aCGAGgGUCCGCCGcGcGC-CCGAgaGCc -3'
miRNA:   3'- -GCUUgCAGGUGGUcC-CGuGGCUgaCG- -5'
18434 3' -56.9 NC_004681.1 + 49774 0.66 0.747686
Target:  5'- -cAugGUCUgcgGCCAcGGCACCaagGGCUGCc -3'
miRNA:   3'- gcUugCAGG---UGGUcCCGUGG---CUGACG- -5'
18434 3' -56.9 NC_004681.1 + 49333 0.7 0.519144
Target:  5'- ---cCGUCCGCCAcggcggcgccgcGGGCGCUGACcacuggGCg -3'
miRNA:   3'- gcuuGCAGGUGGU------------CCCGUGGCUGa-----CG- -5'
18434 3' -56.9 NC_004681.1 + 47906 0.66 0.741681
Target:  5'- aCGAGCaUCCACCAggugggugcguacuuGGGCGCCucgcggguGAaUGCg -3'
miRNA:   3'- -GCUUGcAGGUGGU---------------CCCGUGG--------CUgACG- -5'
18434 3' -56.9 NC_004681.1 + 47117 0.69 0.560141
Target:  5'- uGAGCGacgagaaCGCCgAGGGCcgcGCCGaACUGCg -3'
miRNA:   3'- gCUUGCag-----GUGG-UCCCG---UGGC-UGACG- -5'
18434 3' -56.9 NC_004681.1 + 46289 0.66 0.707024
Target:  5'- gCGucuACGUCCACgGcGGGCAgCCaucCUGCa -3'
miRNA:   3'- -GCu--UGCAGGUGgU-CCCGU-GGcu-GACG- -5'
18434 3' -56.9 NC_004681.1 + 45611 0.67 0.66528
Target:  5'- --cGCGUCgGCCaAGGGUACCGAg--- -3'
miRNA:   3'- gcuUGCAGgUGG-UCCCGUGGCUgacg -5'
18434 3' -56.9 NC_004681.1 + 44629 0.75 0.272701
Target:  5'- -uGAUGagCCACCAGGucuaCACCGACUGCa -3'
miRNA:   3'- gcUUGCa-GGUGGUCCc---GUGGCUGACG- -5'
18434 3' -56.9 NC_004681.1 + 43823 0.69 0.549796
Target:  5'- uGAGCGUgcgaguUCACCgAGGGCGgCGguguACUGCg -3'
miRNA:   3'- gCUUGCA------GGUGG-UCCCGUgGC----UGACG- -5'
18434 3' -56.9 NC_004681.1 + 42344 0.69 0.580984
Target:  5'- gCGGGCGggaCCAgCAGcucGGCgGCCGugUGCg -3'
miRNA:   3'- -GCUUGCa--GGUgGUC---CCG-UGGCugACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.