Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18434 | 3' | -56.9 | NC_004681.1 | + | 41448 | 0.66 | 0.72753 |
Target: 5'- -aAACGUCCuACCAGGGUAU---UUGCg -3' miRNA: 3'- gcUUGCAGG-UGGUCCCGUGgcuGACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 41084 | 0.66 | 0.744688 |
Target: 5'- aGGACGUCCACaAGGaGCucggcgaggucaagGCCauGCUGCa -3' miRNA: 3'- gCUUGCAGGUGgUCC-CG--------------UGGc-UGACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 39430 | 0.7 | 0.48919 |
Target: 5'- gCGGGgGU--GCCAGGcuuccacccGCACCGGCUGCg -3' miRNA: 3'- -GCUUgCAggUGGUCC---------CGUGGCUGACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 39184 | 0.71 | 0.42273 |
Target: 5'- aGGugG-CCACCAGGGCuuGCaCGGC-GCg -3' miRNA: 3'- gCUugCaGGUGGUCCCG--UG-GCUGaCG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 36769 | 0.68 | 0.633638 |
Target: 5'- aGcGCGUCUGCCAGGcCGCUGGCccGCc -3' miRNA: 3'- gCuUGCAGGUGGUCCcGUGGCUGa-CG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 35379 | 0.66 | 0.747686 |
Target: 5'- --uGCGUCCaagccaccggugGCCGgauuccucgacGGGCACCcACUGCu -3' miRNA: 3'- gcuUGCAGG------------UGGU-----------CCCGUGGcUGACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 35190 | 0.66 | 0.747686 |
Target: 5'- gCGAcuACGUCUuccuggAUCAGGagcGCACCGAgcCUGCc -3' miRNA: 3'- -GCU--UGCAGG------UGGUCC---CGUGGCU--GACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 33408 | 0.66 | 0.737657 |
Target: 5'- gCGAACGUCCcggcguacACCGcGGCG-CGACcgGCg -3' miRNA: 3'- -GCUUGCAGG--------UGGUcCCGUgGCUGa-CG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 33323 | 0.74 | 0.314963 |
Target: 5'- gGGACGUUCGCCguccAGGGCACCcGCccGCa -3' miRNA: 3'- gCUUGCAGGUGG----UCCCGUGGcUGa-CG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 32308 | 0.7 | 0.519144 |
Target: 5'- gCGAugGccugcUCCACCAGGuuGCCGAUgaccgUGCc -3' miRNA: 3'- -GCUugC-----AGGUGGUCCcgUGGCUG-----ACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 31381 | 0.66 | 0.747686 |
Target: 5'- aCGAACGgugagggCUACgGGGcGCGCgacgGACUGCc -3' miRNA: 3'- -GCUUGCa------GGUGgUCC-CGUGg---CUGACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 30464 | 1.12 | 0.000744 |
Target: 5'- aCGAACGUCCACCAGGGCACCGACUGCu -3' miRNA: 3'- -GCUUGCAGGUGGUCCCGUGGCUGACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 28494 | 0.69 | 0.570539 |
Target: 5'- gGggUGaCCGCCAGGcCAUUGACUGg -3' miRNA: 3'- gCuuGCaGGUGGUCCcGUGGCUGACg -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 28337 | 0.67 | 0.686248 |
Target: 5'- aCGAACGauguccucgUCACCccGGCGCCGA-UGCa -3' miRNA: 3'- -GCUUGCa--------GGUGGucCCGUGGCUgACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 28154 | 0.67 | 0.686248 |
Target: 5'- uCGAGCGg-CGgCAGcGGCACCGGCa-- -3' miRNA: 3'- -GCUUGCagGUgGUC-CCGUGGCUGacg -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 27916 | 0.66 | 0.72753 |
Target: 5'- aCGGAUGcgCCACCGuuGGCGCCG-CcGCg -3' miRNA: 3'- -GCUUGCa-GGUGGUc-CCGUGGCuGaCG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 24389 | 0.69 | 0.549796 |
Target: 5'- uGAACGUCUACCAGGuGCuggaaaacGgCGACUucgaGCu -3' miRNA: 3'- gCUUGCAGGUGGUCC-CG--------UgGCUGA----CG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 24205 | 0.76 | 0.212542 |
Target: 5'- uGAagGCGUCCGCCAGgcuGGCGCCGGaaccUUGCu -3' miRNA: 3'- gCU--UGCAGGUGGUC---CCGUGGCU----GACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 24065 | 0.69 | 0.543617 |
Target: 5'- aGGACGUCUACCAGgucggcgaacguguuGGCAcgcCCGAUccgGCg -3' miRNA: 3'- gCUUGCAGGUGGUC---------------CCGU---GGCUGa--CG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 23616 | 0.67 | 0.66528 |
Target: 5'- aCGAugACGUCCugCGGguuGGUGCCG-CUGg -3' miRNA: 3'- -GCU--UGCAGGugGUC---CCGUGGCuGACg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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