miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18434 3' -56.9 NC_004681.1 + 35379 0.66 0.747686
Target:  5'- --uGCGUCCaagccaccggugGCCGgauuccucgacGGGCACCcACUGCu -3'
miRNA:   3'- gcuUGCAGG------------UGGU-----------CCCGUGGcUGACG- -5'
18434 3' -56.9 NC_004681.1 + 45611 0.67 0.66528
Target:  5'- --cGCGUCgGCCaAGGGUACCGAg--- -3'
miRNA:   3'- gcuUGCAGgUGG-UCCCGUGGCUgacg -5'
18434 3' -56.9 NC_004681.1 + 28154 0.67 0.686248
Target:  5'- uCGAGCGg-CGgCAGcGGCACCGGCa-- -3'
miRNA:   3'- -GCUUGCagGUgGUC-CCGUGGCUGacg -5'
18434 3' -56.9 NC_004681.1 + 28337 0.67 0.686248
Target:  5'- aCGAACGauguccucgUCACCccGGCGCCGA-UGCa -3'
miRNA:   3'- -GCUUGCa--------GGUGGucCCGUGGCUgACG- -5'
18434 3' -56.9 NC_004681.1 + 11973 0.66 0.707024
Target:  5'- aGAA-GUCCccuCCGuGGGCACCG-CUGg -3'
miRNA:   3'- gCUUgCAGGu--GGU-CCCGUGGCuGACg -5'
18434 3' -56.9 NC_004681.1 + 46289 0.66 0.707024
Target:  5'- gCGucuACGUCCACgGcGGGCAgCCaucCUGCa -3'
miRNA:   3'- -GCu--UGCAGGUGgU-CCCGU-GGcu-GACG- -5'
18434 3' -56.9 NC_004681.1 + 54034 0.66 0.707024
Target:  5'- aCGAGgGUCCGCCGcGcGC-CCGAgaGCc -3'
miRNA:   3'- -GCUUgCAGGUGGUcC-CGuGGCUgaCG- -5'
18434 3' -56.9 NC_004681.1 + 22664 0.66 0.737657
Target:  5'- --uACGUCCGCauccccGGCACCGACcaGCc -3'
miRNA:   3'- gcuUGCAGGUGguc---CCGUGGCUGa-CG- -5'
18434 3' -56.9 NC_004681.1 + 31381 0.66 0.747686
Target:  5'- aCGAACGgugagggCUACgGGGcGCGCgacgGACUGCc -3'
miRNA:   3'- -GCUUGCa------GGUGgUCC-CGUGg---CUGACG- -5'
18434 3' -56.9 NC_004681.1 + 36769 0.68 0.633638
Target:  5'- aGcGCGUCUGCCAGGcCGCUGGCccGCc -3'
miRNA:   3'- gCuUGCAGGUGGUCCcGUGGCUGa-CG- -5'
18434 3' -56.9 NC_004681.1 + 19802 0.68 0.591467
Target:  5'- aGAACGgCCGCCA--GUACCGcguGCUGCg -3'
miRNA:   3'- gCUUGCaGGUGGUccCGUGGC---UGACG- -5'
18434 3' -56.9 NC_004681.1 + 47117 0.69 0.560141
Target:  5'- uGAGCGacgagaaCGCCgAGGGCcgcGCCGaACUGCg -3'
miRNA:   3'- gCUUGCag-----GUGG-UCCCG---UGGC-UGACG- -5'
18434 3' -56.9 NC_004681.1 + 7264 0.82 0.090934
Target:  5'- gCGGcCGUCCACCucGGCGCCGAgUGCg -3'
miRNA:   3'- -GCUuGCAGGUGGucCCGUGGCUgACG- -5'
18434 3' -56.9 NC_004681.1 + 59606 0.77 0.196859
Target:  5'- gCGGAUGgcgUCACCAGGGCGCuCGACauccgGCa -3'
miRNA:   3'- -GCUUGCa--GGUGGUCCCGUG-GCUGa----CG- -5'
18434 3' -56.9 NC_004681.1 + 44629 0.75 0.272701
Target:  5'- -uGAUGagCCACCAGGucuaCACCGACUGCa -3'
miRNA:   3'- gcUUGCa-GGUGGUCCc---GUGGCUGACG- -5'
18434 3' -56.9 NC_004681.1 + 33323 0.74 0.314963
Target:  5'- gGGACGUUCGCCguccAGGGCACCcGCccGCa -3'
miRNA:   3'- gCUUGCAGGUGG----UCCCGUGGcUGa-CG- -5'
18434 3' -56.9 NC_004681.1 + 39430 0.7 0.48919
Target:  5'- gCGGGgGU--GCCAGGcuuccacccGCACCGGCUGCg -3'
miRNA:   3'- -GCUUgCAggUGGUCC---------CGUGGCUGACG- -5'
18434 3' -56.9 NC_004681.1 + 49333 0.7 0.519144
Target:  5'- ---cCGUCCGCCAcggcggcgccgcGGGCGCUGACcacuggGCg -3'
miRNA:   3'- gcuuGCAGGUGGU------------CCCGUGGCUGa-----CG- -5'
18434 3' -56.9 NC_004681.1 + 24389 0.69 0.549796
Target:  5'- uGAACGUCUACCAGGuGCuggaaaacGgCGACUucgaGCu -3'
miRNA:   3'- gCUUGCAGGUGGUCC-CG--------UgGCUGA----CG- -5'
18434 3' -56.9 NC_004681.1 + 61151 0.69 0.549796
Target:  5'- aCGAACG-CCGCCgcgacgcccAGGGCAacugggUCGACgGCg -3'
miRNA:   3'- -GCUUGCaGGUGG---------UCCCGU------GGCUGaCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.