Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18434 | 3' | -56.9 | NC_004681.1 | + | 24205 | 0.76 | 0.212542 |
Target: 5'- uGAagGCGUCCGCCAGgcuGGCGCCGGaaccUUGCu -3' miRNA: 3'- gCU--UGCAGGUGGUC---CCGUGGCU----GACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 69221 | 0.67 | 0.675783 |
Target: 5'- gCGAGgGag-GCCAGGGCGCgGGCgagGCg -3' miRNA: 3'- -GCUUgCaggUGGUCCCGUGgCUGa--CG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 10757 | 0.67 | 0.686248 |
Target: 5'- aCGGccGCGggCACCgGGGGCGCCaGGCaGCg -3' miRNA: 3'- -GCU--UGCagGUGG-UCCCGUGG-CUGaCG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 60665 | 0.66 | 0.757607 |
Target: 5'- aCGuuCGUCgGCCAGcGGC-CCGAg-GCg -3' miRNA: 3'- -GCuuGCAGgUGGUC-CCGuGGCUgaCG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 39184 | 0.71 | 0.42273 |
Target: 5'- aGGugG-CCACCAGGGCuuGCaCGGC-GCg -3' miRNA: 3'- gCUugCaGGUGGUCCCG--UG-GCUGaCG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 62795 | 0.71 | 0.469677 |
Target: 5'- ---cCGUCCGCCucauccGGCGCCGACgacGCa -3' miRNA: 3'- gcuuGCAGGUGGuc----CCGUGGCUGa--CG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 32308 | 0.7 | 0.519144 |
Target: 5'- gCGAugGccugcUCCACCAGGuuGCCGAUgaccgUGCc -3' miRNA: 3'- -GCUugC-----AGGUGGUCCcgUGGCUG-----ACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 24065 | 0.69 | 0.543617 |
Target: 5'- aGGACGUCUACCAGgucggcgaacguguuGGCAcgcCCGAUccgGCg -3' miRNA: 3'- gCUUGCAGGUGGUC---------------CCGU---GGCUGa--CG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 28494 | 0.69 | 0.570539 |
Target: 5'- gGggUGaCCGCCAGGcCAUUGACUGg -3' miRNA: 3'- gCuuGCaGGUGGUCCcGUGGCUGACg -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 23616 | 0.67 | 0.66528 |
Target: 5'- aCGAugACGUCCugCGGguuGGUGCCG-CUGg -3' miRNA: 3'- -GCU--UGCAGGugGUC---CCGUGGCuGACg -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 72592 | 0.68 | 0.630469 |
Target: 5'- aCGGAUGUCUagagcacggagucaACCAuuGCGCgGACUGCa -3' miRNA: 3'- -GCUUGCAGG--------------UGGUccCGUGgCUGACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 12316 | 0.69 | 0.549796 |
Target: 5'- aGAACGggCCACCGGGGaugCGGC-GCg -3' miRNA: 3'- gCUUGCa-GGUGGUCCCgugGCUGaCG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 7574 | 0.76 | 0.241061 |
Target: 5'- gGAGCGUCCGaacgCAGGGC-CUGGCUGa -3' miRNA: 3'- gCUUGCAGGUg---GUCCCGuGGCUGACg -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 23454 | 0.68 | 0.633638 |
Target: 5'- aGGAgGUugaCCACCucGGGCGCCugaaGCUGCc -3' miRNA: 3'- gCUUgCA---GGUGGu-CCCGUGGc---UGACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 64102 | 0.73 | 0.321713 |
Target: 5'- gGAGCGUCCaaguuuugugucaGCCGGGGuCACCGAgUaGUg -3' miRNA: 3'- gCUUGCAGG-------------UGGUCCC-GUGGCUgA-CG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 43823 | 0.69 | 0.549796 |
Target: 5'- uGAGCGUgcgaguUCACCgAGGGCGgCGguguACUGCg -3' miRNA: 3'- gCUUGCA------GGUGG-UCCCGUgGC----UGACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 21935 | 0.67 | 0.654749 |
Target: 5'- gCGAAccauuCGUCCAagguguaugCGGaGGCGCCGGuCUGCa -3' miRNA: 3'- -GCUU-----GCAGGUg--------GUC-CCGUGGCU-GACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 6469 | 0.67 | 0.675783 |
Target: 5'- uCGAcaGCG-CCAUCGGgcguGGCGCCcaagGGCUGCa -3' miRNA: 3'- -GCU--UGCaGGUGGUC----CCGUGG----CUGACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 16875 | 0.73 | 0.32247 |
Target: 5'- gGGAUG-CCGCCA-GGCACCGACgUGUc -3' miRNA: 3'- gCUUGCaGGUGGUcCCGUGGCUG-ACG- -5' |
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18434 | 3' | -56.9 | NC_004681.1 | + | 57110 | 0.7 | 0.499089 |
Target: 5'- aGAGCGgCUACCGcGGUACCGGCUa- -3' miRNA: 3'- gCUUGCaGGUGGUcCCGUGGCUGAcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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