miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18434 5' -55.9 NC_004681.1 + 18549 0.66 0.768071
Target:  5'- cUGGCGGAcCCGUCCaaGucGUGGUUCGg -3'
miRNA:   3'- -ACCGUCU-GGCAGGacCucUACUAGGU- -5'
18434 5' -55.9 NC_004681.1 + 20085 0.66 0.758072
Target:  5'- cGGaCuGACCGgCCUGGAGGUuGUCg- -3'
miRNA:   3'- aCC-GuCUGGCaGGACCUCUAcUAGgu -5'
18434 5' -55.9 NC_004681.1 + 37400 0.66 0.758072
Target:  5'- gGGCAaGCCcaUCCUGGAGcUGAcCCGg -3'
miRNA:   3'- aCCGUcUGGc-AGGACCUCuACUaGGU- -5'
18434 5' -55.9 NC_004681.1 + 68535 0.66 0.747951
Target:  5'- cGGCAGccucaguagaguGCCGUCCUGGu--UGA-CCu -3'
miRNA:   3'- aCCGUC------------UGGCAGGACCucuACUaGGu -5'
18434 5' -55.9 NC_004681.1 + 47120 0.66 0.747951
Target:  5'- gGGuCGGGCuCGUCggUGGGGAUGGUCa- -3'
miRNA:   3'- aCC-GUCUG-GCAGg-ACCUCUACUAGgu -5'
18434 5' -55.9 NC_004681.1 + 44785 0.68 0.653067
Target:  5'- gGGaccucuGGACCGcCCUGGAGGUGggCa- -3'
miRNA:   3'- aCCg-----UCUGGCaGGACCUCUACuaGgu -5'
18434 5' -55.9 NC_004681.1 + 2147 0.68 0.653067
Target:  5'- cGGCAGGuuGcgcggCgUGGuGAUGAUCCc -3'
miRNA:   3'- aCCGUCUggCa----GgACCuCUACUAGGu -5'
18434 5' -55.9 NC_004681.1 + 74520 0.69 0.567156
Target:  5'- gUGGCuGGACCGcCCcGGAaGGUGAcuUCCGa -3'
miRNA:   3'- -ACCG-UCUGGCaGGaCCU-CUACU--AGGU- -5'
18434 5' -55.9 NC_004681.1 + 48859 0.72 0.416971
Target:  5'- aGGUguAGccGCCGUCCUGGAGGUGcuggaCCAa -3'
miRNA:   3'- aCCG--UC--UGGCAGGACCUCUACua---GGU- -5'
18434 5' -55.9 NC_004681.1 + 12423 0.73 0.347382
Target:  5'- cGGCgAGACCGgcUCCUGGAgcacGAUGGUCa- -3'
miRNA:   3'- aCCG-UCUGGC--AGGACCU----CUACUAGgu -5'
18434 5' -55.9 NC_004681.1 + 14768 0.77 0.1904
Target:  5'- -aGCAGGCCGUCCUGGAGcuucuUGAgcUCCu -3'
miRNA:   3'- acCGUCUGGCAGGACCUCu----ACU--AGGu -5'
18434 5' -55.9 NC_004681.1 + 30499 1.08 0.001406
Target:  5'- cUGGCAGACCGUCCUGGAGAUGAUCCAc -3'
miRNA:   3'- -ACCGUCUGGCAGGACCUCUACUAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.