Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18434 | 5' | -55.9 | NC_004681.1 | + | 18549 | 0.66 | 0.768071 |
Target: 5'- cUGGCGGAcCCGUCCaaGucGUGGUUCGg -3' miRNA: 3'- -ACCGUCU-GGCAGGacCucUACUAGGU- -5' |
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18434 | 5' | -55.9 | NC_004681.1 | + | 20085 | 0.66 | 0.758072 |
Target: 5'- cGGaCuGACCGgCCUGGAGGUuGUCg- -3' miRNA: 3'- aCC-GuCUGGCaGGACCUCUAcUAGgu -5' |
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18434 | 5' | -55.9 | NC_004681.1 | + | 37400 | 0.66 | 0.758072 |
Target: 5'- gGGCAaGCCcaUCCUGGAGcUGAcCCGg -3' miRNA: 3'- aCCGUcUGGc-AGGACCUCuACUaGGU- -5' |
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18434 | 5' | -55.9 | NC_004681.1 | + | 68535 | 0.66 | 0.747951 |
Target: 5'- cGGCAGccucaguagaguGCCGUCCUGGu--UGA-CCu -3' miRNA: 3'- aCCGUC------------UGGCAGGACCucuACUaGGu -5' |
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18434 | 5' | -55.9 | NC_004681.1 | + | 47120 | 0.66 | 0.747951 |
Target: 5'- gGGuCGGGCuCGUCggUGGGGAUGGUCa- -3' miRNA: 3'- aCC-GUCUG-GCAGg-ACCUCUACUAGgu -5' |
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18434 | 5' | -55.9 | NC_004681.1 | + | 44785 | 0.68 | 0.653067 |
Target: 5'- gGGaccucuGGACCGcCCUGGAGGUGggCa- -3' miRNA: 3'- aCCg-----UCUGGCaGGACCUCUACuaGgu -5' |
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18434 | 5' | -55.9 | NC_004681.1 | + | 2147 | 0.68 | 0.653067 |
Target: 5'- cGGCAGGuuGcgcggCgUGGuGAUGAUCCc -3' miRNA: 3'- aCCGUCUggCa----GgACCuCUACUAGGu -5' |
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18434 | 5' | -55.9 | NC_004681.1 | + | 74520 | 0.69 | 0.567156 |
Target: 5'- gUGGCuGGACCGcCCcGGAaGGUGAcuUCCGa -3' miRNA: 3'- -ACCG-UCUGGCaGGaCCU-CUACU--AGGU- -5' |
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18434 | 5' | -55.9 | NC_004681.1 | + | 48859 | 0.72 | 0.416971 |
Target: 5'- aGGUguAGccGCCGUCCUGGAGGUGcuggaCCAa -3' miRNA: 3'- aCCG--UC--UGGCAGGACCUCUACua---GGU- -5' |
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18434 | 5' | -55.9 | NC_004681.1 | + | 12423 | 0.73 | 0.347382 |
Target: 5'- cGGCgAGACCGgcUCCUGGAgcacGAUGGUCa- -3' miRNA: 3'- aCCG-UCUGGC--AGGACCU----CUACUAGgu -5' |
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18434 | 5' | -55.9 | NC_004681.1 | + | 14768 | 0.77 | 0.1904 |
Target: 5'- -aGCAGGCCGUCCUGGAGcuucuUGAgcUCCu -3' miRNA: 3'- acCGUCUGGCAGGACCUCu----ACU--AGGu -5' |
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18434 | 5' | -55.9 | NC_004681.1 | + | 30499 | 1.08 | 0.001406 |
Target: 5'- cUGGCAGACCGUCCUGGAGAUGAUCCAc -3' miRNA: 3'- -ACCGUCUGGCAGGACCUCUACUAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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