miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18435 3' -55.7 NC_004681.1 + 66897 0.66 0.783482
Target:  5'- cGUCAAGUcuggcgagcuguccaUCGUCgucguugacUCUGUgGCGGCCCu -3'
miRNA:   3'- -CAGUUCG---------------AGCGGa--------AGGUAgUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 74992 0.66 0.779589
Target:  5'- gGUCAcGGUguaGCCagcggCCGUCACGGUCUc -3'
miRNA:   3'- -CAGU-UCGag-CGGaa---GGUAGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 40267 0.66 0.779589
Target:  5'- -gCGGGUcuaucucaUCGCCUcgaUCUgcggcGUCGCGGCCUg -3'
miRNA:   3'- caGUUCG--------AGCGGA---AGG-----UAGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 34650 0.66 0.769757
Target:  5'- cGUUguuGUUUGCCcagUCCcUCAUGGCCUg -3'
miRNA:   3'- -CAGuu-CGAGCGGa--AGGuAGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 68901 0.66 0.759788
Target:  5'- aUCGAGg-CGCUgaCCAucgUCACGGCCg -3'
miRNA:   3'- cAGUUCgaGCGGaaGGU---AGUGCCGGg -5'
18435 3' -55.7 NC_004681.1 + 19728 0.66 0.753746
Target:  5'- -cCAGGCUUGCCcacccucgCCGUCaucgaccacgccgcaGCGcGCCCa -3'
miRNA:   3'- caGUUCGAGCGGaa------GGUAG---------------UGC-CGGG- -5'
18435 3' -55.7 NC_004681.1 + 44901 0.66 0.749694
Target:  5'- uGUCGuaGGuCUUGCCcaccUCCAggGCGGUCCa -3'
miRNA:   3'- -CAGU--UC-GAGCGGa---AGGUagUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 41191 0.66 0.739485
Target:  5'- uGUCAAGCUgCGCCUgcguaUCCAgucgauuacgUACGuGCuCCa -3'
miRNA:   3'- -CAGUUCGA-GCGGA-----AGGUa---------GUGC-CG-GG- -5'
18435 3' -55.7 NC_004681.1 + 71634 0.66 0.739485
Target:  5'- -aCcGGCUCagaGCCUUCC-UCGCGGUaguCCa -3'
miRNA:   3'- caGuUCGAG---CGGAAGGuAGUGCCG---GG- -5'
18435 3' -55.7 NC_004681.1 + 30818 0.66 0.739485
Target:  5'- cGUCGAGCUCGCC--CCAcaugugggaguUCGCaccgccaccagGGCCg -3'
miRNA:   3'- -CAGUUCGAGCGGaaGGU-----------AGUG-----------CCGGg -5'
18435 3' -55.7 NC_004681.1 + 7690 0.66 0.739485
Target:  5'- aGUCGcGggCGUaggugCCAUCACGGCCUc -3'
miRNA:   3'- -CAGUuCgaGCGgaa--GGUAGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 10848 0.67 0.718768
Target:  5'- aUgGAGCUUGCCcuugUCCcagugGUCGCGgacGCCCa -3'
miRNA:   3'- cAgUUCGAGCGGa---AGG-----UAGUGC---CGGG- -5'
18435 3' -55.7 NC_004681.1 + 17357 0.67 0.708281
Target:  5'- cUCAAGguCUCGCCgacugcUCCAgCGCGGUCg -3'
miRNA:   3'- cAGUUC--GAGCGGa-----AGGUaGUGCCGGg -5'
18435 3' -55.7 NC_004681.1 + 52603 0.67 0.70828
Target:  5'- gGUCGAaCUCGCCgUCUAggCAC-GCCCa -3'
miRNA:   3'- -CAGUUcGAGCGGaAGGUa-GUGcCGGG- -5'
18435 3' -55.7 NC_004681.1 + 18571 0.67 0.687102
Target:  5'- aUC-AGCUgGCCa-CCGaacuUCAUGGCCCg -3'
miRNA:   3'- cAGuUCGAgCGGaaGGU----AGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 62967 0.67 0.687102
Target:  5'- -cCAGGC-CGCUUUguagCgGUCGCGGUCCu -3'
miRNA:   3'- caGUUCGaGCGGAA----GgUAGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 22573 0.67 0.687102
Target:  5'- gGUCuGGgUCGCCagCCGcaUCaACGGCCUg -3'
miRNA:   3'- -CAGuUCgAGCGGaaGGU--AG-UGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 54998 0.68 0.676432
Target:  5'- -gCAAGCUCggccugaaguGCCUUCagGUCGC-GCCCg -3'
miRNA:   3'- caGUUCGAG----------CGGAAGg-UAGUGcCGGG- -5'
18435 3' -55.7 NC_004681.1 + 51326 0.68 0.676432
Target:  5'- cUCGGGCUUGagaaucUCCAUgACGGCCg -3'
miRNA:   3'- cAGUUCGAGCgga---AGGUAgUGCCGGg -5'
18435 3' -55.7 NC_004681.1 + 64679 0.68 0.64422
Target:  5'- -cCAAGCUgGgCCUgacauaCAUCGCaGGCCCc -3'
miRNA:   3'- caGUUCGAgC-GGAag----GUAGUG-CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.