Results 41 - 49 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18435 | 3' | -55.7 | NC_004681.1 | + | 43443 | 0.73 | 0.374179 |
Target: 5'- gGUUGAG-UCGUCauugUCCAUCACGGUCCc -3' miRNA: 3'- -CAGUUCgAGCGGa---AGGUAGUGCCGGG- -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 13255 | 0.74 | 0.3409 |
Target: 5'- cGUCAAGCUCGCCgaauUCCG-CGuccaGGCCa -3' miRNA: 3'- -CAGUUCGAGCGGa---AGGUaGUg---CCGGg -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 8629 | 0.74 | 0.316618 |
Target: 5'- -aCGAGCUgaGCCUcgcggaccugauuUCC-UCGCGGCCCg -3' miRNA: 3'- caGUUCGAg-CGGA-------------AGGuAGUGCCGGG- -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 65202 | 0.74 | 0.309816 |
Target: 5'- uUCAGGg-CGCCUUCCAUCAUugccaGGCCg -3' miRNA: 3'- cAGUUCgaGCGGAAGGUAGUG-----CCGGg -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 6921 | 0.74 | 0.325082 |
Target: 5'- uUCAGGCU-GUCg-CCGUCACGGUCCa -3' miRNA: 3'- cAGUUCGAgCGGaaGGUAGUGCCGGG- -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 41015 | 0.77 | 0.20179 |
Target: 5'- -gUggGCUUGCCaUCCAUCGCGGCa- -3' miRNA: 3'- caGuuCGAGCGGaAGGUAGUGCCGgg -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 16727 | 0.79 | 0.167738 |
Target: 5'- -cCGGGCUgaugccCGCCgccUCCAUCGCGGCCUg -3' miRNA: 3'- caGUUCGA------GCGGa--AGGUAGUGCCGGG- -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 69385 | 0.79 | 0.158999 |
Target: 5'- -gCGAGCUCGUCcacgcggUCCAUCAgauCGGCCCa -3' miRNA: 3'- caGUUCGAGCGGa------AGGUAGU---GCCGGG- -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 30676 | 1.11 | 0.000915 |
Target: 5'- gGUCAAGCUCGCCUUCCAUCACGGCCCu -3' miRNA: 3'- -CAGUUCGAGCGGAAGGUAGUGCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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