miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18435 3' -55.7 NC_004681.1 + 12525 0.69 0.569105
Target:  5'- cGUCAc-UUCGCCguccucgUCCGUCAcCGGCUCa -3'
miRNA:   3'- -CAGUucGAGCGGa------AGGUAGU-GCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 53718 0.69 0.569105
Target:  5'- cGUCGuuCUUgGCC-UCCGUCugGGCCUc -3'
miRNA:   3'- -CAGUucGAG-CGGaAGGUAGugCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 36545 0.69 0.601164
Target:  5'- uUCAAGCucuUCGCCggUUC-UCACaGCCCg -3'
miRNA:   3'- cAGUUCG---AGCGGa-AGGuAGUGcCGGG- -5'
18435 3' -55.7 NC_004681.1 + 14547 0.69 0.611912
Target:  5'- gGUC-GGCaUCGCCgccaccgCCAcCACGGCCg -3'
miRNA:   3'- -CAGuUCG-AGCGGaa-----GGUaGUGCCGGg -5'
18435 3' -55.7 NC_004681.1 + 23950 0.68 0.622676
Target:  5'- cGUCAGGC-CGCUgaUCCAgCugGGCUg -3'
miRNA:   3'- -CAGUUCGaGCGGa-AGGUaGugCCGGg -5'
18435 3' -55.7 NC_004681.1 + 22910 0.68 0.633448
Target:  5'- -gCGGGgUCGCCccggcgaugCCGUaguaGCGGCCCa -3'
miRNA:   3'- caGUUCgAGCGGaa-------GGUAg---UGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 3137 0.68 0.633449
Target:  5'- -cCAgcGGCUCGCCcUCCucCAgGGCCUg -3'
miRNA:   3'- caGU--UCGAGCGGaAGGuaGUgCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 26318 0.68 0.64422
Target:  5'- -gCGGGCaUCGCCg-CCGUgGCGGgCCa -3'
miRNA:   3'- caGUUCG-AGCGGaaGGUAgUGCCgGG- -5'
18435 3' -55.7 NC_004681.1 + 29818 0.68 0.64422
Target:  5'- --gGAGCUCGgCaUCCAaCGCGGCgCg -3'
miRNA:   3'- cagUUCGAGCgGaAGGUaGUGCCGgG- -5'
18435 3' -55.7 NC_004681.1 + 64679 0.68 0.64422
Target:  5'- -cCAAGCUgGgCCUgacauaCAUCGCaGGCCCc -3'
miRNA:   3'- caGUUCGAgC-GGAag----GUAGUG-CCGGG- -5'
18435 3' -55.7 NC_004681.1 + 54998 0.68 0.676432
Target:  5'- -gCAAGCUCggccugaaguGCCUUCagGUCGC-GCCCg -3'
miRNA:   3'- caGUUCGAG----------CGGAAGg-UAGUGcCGGG- -5'
18435 3' -55.7 NC_004681.1 + 51326 0.68 0.676432
Target:  5'- cUCGGGCUUGagaaucUCCAUgACGGCCg -3'
miRNA:   3'- cAGUUCGAGCgga---AGGUAgUGCCGGg -5'
18435 3' -55.7 NC_004681.1 + 22573 0.67 0.687102
Target:  5'- gGUCuGGgUCGCCagCCGcaUCaACGGCCUg -3'
miRNA:   3'- -CAGuUCgAGCGGaaGGU--AG-UGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 62967 0.67 0.687102
Target:  5'- -cCAGGC-CGCUUUguagCgGUCGCGGUCCu -3'
miRNA:   3'- caGUUCGaGCGGAA----GgUAGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 18571 0.67 0.687102
Target:  5'- aUC-AGCUgGCCa-CCGaacuUCAUGGCCCg -3'
miRNA:   3'- cAGuUCGAgCGGaaGGU----AGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 52603 0.67 0.70828
Target:  5'- gGUCGAaCUCGCCgUCUAggCAC-GCCCa -3'
miRNA:   3'- -CAGUUcGAGCGGaAGGUa-GUGcCGGG- -5'
18435 3' -55.7 NC_004681.1 + 17357 0.67 0.708281
Target:  5'- cUCAAGguCUCGCCgacugcUCCAgCGCGGUCg -3'
miRNA:   3'- cAGUUC--GAGCGGa-----AGGUaGUGCCGGg -5'
18435 3' -55.7 NC_004681.1 + 10848 0.67 0.718768
Target:  5'- aUgGAGCUUGCCcuugUCCcagugGUCGCGgacGCCCa -3'
miRNA:   3'- cAgUUCGAGCGGa---AGG-----UAGUGC---CGGG- -5'
18435 3' -55.7 NC_004681.1 + 41191 0.66 0.739485
Target:  5'- uGUCAAGCUgCGCCUgcguaUCCAgucgauuacgUACGuGCuCCa -3'
miRNA:   3'- -CAGUUCGA-GCGGA-----AGGUa---------GUGC-CG-GG- -5'
18435 3' -55.7 NC_004681.1 + 71634 0.66 0.739485
Target:  5'- -aCcGGCUCagaGCCUUCC-UCGCGGUaguCCa -3'
miRNA:   3'- caGuUCGAG---CGGAAGGuAGUGCCG---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.