miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18435 3' -55.7 NC_004681.1 + 503 0.72 0.428061
Target:  5'- cGUCAAGCUgGaCCcggCCAUCuuccGCGGCCg -3'
miRNA:   3'- -CAGUUCGAgC-GGaa-GGUAG----UGCCGGg -5'
18435 3' -55.7 NC_004681.1 + 3137 0.68 0.633449
Target:  5'- -cCAgcGGCUCGCCcUCCucCAgGGCCUg -3'
miRNA:   3'- caGU--UCGAGCGGaAGGuaGUgCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 3641 0.71 0.466428
Target:  5'- -gCAGGCcgcccUCGCCUUCgaCGUCGCcGCCCa -3'
miRNA:   3'- caGUUCG-----AGCGGAAG--GUAGUGcCGGG- -5'
18435 3' -55.7 NC_004681.1 + 6921 0.74 0.325082
Target:  5'- uUCAGGCU-GUCg-CCGUCACGGUCCa -3'
miRNA:   3'- cAGUUCGAgCGGaaGGUAGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 7690 0.66 0.739485
Target:  5'- aGUCGcGggCGUaggugCCAUCACGGCCUc -3'
miRNA:   3'- -CAGUuCgaGCGgaa--GGUAGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 8629 0.74 0.316618
Target:  5'- -aCGAGCUgaGCCUcgcggaccugauuUCC-UCGCGGCCCg -3'
miRNA:   3'- caGUUCGAg-CGGA-------------AGGuAGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 10848 0.67 0.718768
Target:  5'- aUgGAGCUUGCCcuugUCCcagugGUCGCGgacGCCCa -3'
miRNA:   3'- cAgUUCGAGCGGa---AGG-----UAGUGC---CGGG- -5'
18435 3' -55.7 NC_004681.1 + 12525 0.69 0.569105
Target:  5'- cGUCAc-UUCGCCguccucgUCCGUCAcCGGCUCa -3'
miRNA:   3'- -CAGUucGAGCGGa------AGGUAGU-GCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 13255 0.74 0.3409
Target:  5'- cGUCAAGCUCGCCgaauUCCG-CGuccaGGCCa -3'
miRNA:   3'- -CAGUUCGAGCGGa---AGGUaGUg---CCGGg -5'
18435 3' -55.7 NC_004681.1 + 13536 0.73 0.365655
Target:  5'- uUCAucGGCUCGCCgUUCuCAucgaacagcugcUCACGGUCCa -3'
miRNA:   3'- cAGU--UCGAGCGG-AAG-GU------------AGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 14547 0.69 0.611912
Target:  5'- gGUC-GGCaUCGCCgccaccgCCAcCACGGCCg -3'
miRNA:   3'- -CAGuUCG-AGCGGaa-----GGUaGUGCCGGg -5'
18435 3' -55.7 NC_004681.1 + 16416 0.7 0.516748
Target:  5'- ----uGCUCGgCUUCCGUCGaucCGGCCg -3'
miRNA:   3'- caguuCGAGCgGAAGGUAGU---GCCGGg -5'
18435 3' -55.7 NC_004681.1 + 16727 0.79 0.167738
Target:  5'- -cCGGGCUgaugccCGCCgccUCCAUCGCGGCCUg -3'
miRNA:   3'- caGUUCGA------GCGGa--AGGUAGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 17357 0.67 0.708281
Target:  5'- cUCAAGguCUCGCCgacugcUCCAgCGCGGUCg -3'
miRNA:   3'- cAGUUC--GAGCGGa-----AGGUaGUGCCGGg -5'
18435 3' -55.7 NC_004681.1 + 18571 0.67 0.687102
Target:  5'- aUC-AGCUgGCCa-CCGaacuUCAUGGCCCg -3'
miRNA:   3'- cAGuUCGAgCGGaaGGU----AGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 19728 0.66 0.753746
Target:  5'- -cCAGGCUUGCCcacccucgCCGUCaucgaccacgccgcaGCGcGCCCa -3'
miRNA:   3'- caGUUCGAGCGGaa------GGUAG---------------UGC-CGGG- -5'
18435 3' -55.7 NC_004681.1 + 22573 0.67 0.687102
Target:  5'- gGUCuGGgUCGCCagCCGcaUCaACGGCCUg -3'
miRNA:   3'- -CAGuUCgAGCGGaaGGU--AG-UGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 22910 0.68 0.633448
Target:  5'- -gCGGGgUCGCCccggcgaugCCGUaguaGCGGCCCa -3'
miRNA:   3'- caGUUCgAGCGGaa-------GGUAg---UGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 23666 0.7 0.537488
Target:  5'- aUCGAGCUgGCC-UCC--UACGcGCCCg -3'
miRNA:   3'- cAGUUCGAgCGGaAGGuaGUGC-CGGG- -5'
18435 3' -55.7 NC_004681.1 + 23950 0.68 0.622676
Target:  5'- cGUCAGGC-CGCUgaUCCAgCugGGCUg -3'
miRNA:   3'- -CAGUUCGaGCGGa-AGGUaGugCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.