miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18435 3' -55.7 NC_004681.1 + 26318 0.68 0.64422
Target:  5'- -gCGGGCaUCGCCg-CCGUgGCGGgCCa -3'
miRNA:   3'- caGUUCG-AGCGGaaGGUAgUGCCgGG- -5'
18435 3' -55.7 NC_004681.1 + 29818 0.68 0.64422
Target:  5'- --gGAGCUCGgCaUCCAaCGCGGCgCg -3'
miRNA:   3'- cagUUCGAGCgGaAGGUaGUGCCGgG- -5'
18435 3' -55.7 NC_004681.1 + 30676 1.11 0.000915
Target:  5'- gGUCAAGCUCGCCUUCCAUCACGGCCCu -3'
miRNA:   3'- -CAGUUCGAGCGGAAGGUAGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 30818 0.66 0.739485
Target:  5'- cGUCGAGCUCGCC--CCAcaugugggaguUCGCaccgccaccagGGCCg -3'
miRNA:   3'- -CAGUUCGAGCGGaaGGU-----------AGUG-----------CCGGg -5'
18435 3' -55.7 NC_004681.1 + 32156 0.7 0.516748
Target:  5'- cUCGAGgaCGCCUUCCuugCGCugcuuGCCCa -3'
miRNA:   3'- cAGUUCgaGCGGAAGGua-GUGc----CGGG- -5'
18435 3' -55.7 NC_004681.1 + 34650 0.66 0.769757
Target:  5'- cGUUguuGUUUGCCcagUCCcUCAUGGCCUg -3'
miRNA:   3'- -CAGuu-CGAGCGGa--AGGuAGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 36545 0.69 0.601164
Target:  5'- uUCAAGCucuUCGCCggUUC-UCACaGCCCg -3'
miRNA:   3'- cAGUUCG---AGCGGa-AGGuAGUGcCGGG- -5'
18435 3' -55.7 NC_004681.1 + 38534 0.73 0.349016
Target:  5'- uGUCGuucCUCGCucuCUUCC-UCGCGGCCCu -3'
miRNA:   3'- -CAGUuc-GAGCG---GAAGGuAGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 39097 0.69 0.569105
Target:  5'- cGUCGAcGUUgaCGCCUUCC-UCGuCGGCCa -3'
miRNA:   3'- -CAGUU-CGA--GCGGAAGGuAGU-GCCGGg -5'
18435 3' -55.7 NC_004681.1 + 40267 0.66 0.779589
Target:  5'- -gCGGGUcuaucucaUCGCCUcgaUCUgcggcGUCGCGGCCUg -3'
miRNA:   3'- caGUUCG--------AGCGGA---AGG-----UAGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 41015 0.77 0.20179
Target:  5'- -gUggGCUUGCCaUCCAUCGCGGCa- -3'
miRNA:   3'- caGuuCGAGCGGaAGGUAGUGCCGgg -5'
18435 3' -55.7 NC_004681.1 + 41191 0.66 0.739485
Target:  5'- uGUCAAGCUgCGCCUgcguaUCCAgucgauuacgUACGuGCuCCa -3'
miRNA:   3'- -CAGUUCGA-GCGGA-----AGGUa---------GUGC-CG-GG- -5'
18435 3' -55.7 NC_004681.1 + 43443 0.73 0.374179
Target:  5'- gGUUGAG-UCGUCauugUCCAUCACGGUCCc -3'
miRNA:   3'- -CAGUUCgAGCGGa---AGGUAGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 44901 0.66 0.749694
Target:  5'- uGUCGuaGGuCUUGCCcaccUCCAggGCGGUCCa -3'
miRNA:   3'- -CAGU--UC-GAGCGGa---AGGUagUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 47119 0.7 0.547966
Target:  5'- gGUCGGGCUCGUCgguggggaUgGUCAgGGCCUg -3'
miRNA:   3'- -CAGUUCGAGCGGaa------GgUAGUgCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 51326 0.68 0.676432
Target:  5'- cUCGGGCUUGagaaucUCCAUgACGGCCg -3'
miRNA:   3'- cAGUUCGAGCgga---AGGUAgUGCCGGg -5'
18435 3' -55.7 NC_004681.1 + 52603 0.67 0.70828
Target:  5'- gGUCGAaCUCGCCgUCUAggCAC-GCCCa -3'
miRNA:   3'- -CAGUUcGAGCGGaAGGUa-GUGcCGGG- -5'
18435 3' -55.7 NC_004681.1 + 53284 0.71 0.456666
Target:  5'- --gGAGCUCGUagucgUCCAaugUCGCGGCCa -3'
miRNA:   3'- cagUUCGAGCGga---AGGU---AGUGCCGGg -5'
18435 3' -55.7 NC_004681.1 + 53718 0.69 0.569105
Target:  5'- cGUCGuuCUUgGCC-UCCGUCugGGCCUc -3'
miRNA:   3'- -CAGUucGAG-CGGaAGGUAGugCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 54998 0.68 0.676432
Target:  5'- -gCAAGCUCggccugaaguGCCUUCagGUCGC-GCCCg -3'
miRNA:   3'- caGUUCGAG----------CGGAAGg-UAGUGcCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.