Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18435 | 3' | -55.7 | NC_004681.1 | + | 74992 | 0.66 | 0.779589 |
Target: 5'- gGUCAcGGUguaGCCagcggCCGUCACGGUCUc -3' miRNA: 3'- -CAGU-UCGag-CGGaa---GGUAGUGCCGGG- -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 71634 | 0.66 | 0.739485 |
Target: 5'- -aCcGGCUCagaGCCUUCC-UCGCGGUaguCCa -3' miRNA: 3'- caGuUCGAG---CGGAAGGuAGUGCCG---GG- -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 69385 | 0.79 | 0.158999 |
Target: 5'- -gCGAGCUCGUCcacgcggUCCAUCAgauCGGCCCa -3' miRNA: 3'- caGUUCGAGCGGa------AGGUAGU---GCCGGG- -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 68901 | 0.66 | 0.759788 |
Target: 5'- aUCGAGg-CGCUgaCCAucgUCACGGCCg -3' miRNA: 3'- cAGUUCgaGCGGaaGGU---AGUGCCGGg -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 66897 | 0.66 | 0.783482 |
Target: 5'- cGUCAAGUcuggcgagcuguccaUCGUCgucguugacUCUGUgGCGGCCCu -3' miRNA: 3'- -CAGUUCG---------------AGCGGa--------AGGUAgUGCCGGG- -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 65202 | 0.74 | 0.309816 |
Target: 5'- uUCAGGg-CGCCUUCCAUCAUugccaGGCCg -3' miRNA: 3'- cAGUUCgaGCGGAAGGUAGUG-----CCGGg -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 64679 | 0.68 | 0.64422 |
Target: 5'- -cCAAGCUgGgCCUgacauaCAUCGCaGGCCCc -3' miRNA: 3'- caGUUCGAgC-GGAag----GUAGUG-CCGGG- -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 62967 | 0.67 | 0.687102 |
Target: 5'- -cCAGGC-CGCUUUguagCgGUCGCGGUCCu -3' miRNA: 3'- caGUUCGaGCGGAA----GgUAGUGCCGGG- -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 60676 | 0.72 | 0.40868 |
Target: 5'- cGUCGAGCaccacguUCGUCggCCA--GCGGCCCg -3' miRNA: 3'- -CAGUUCG-------AGCGGaaGGUagUGCCGGG- -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 54998 | 0.68 | 0.676432 |
Target: 5'- -gCAAGCUCggccugaaguGCCUUCagGUCGC-GCCCg -3' miRNA: 3'- caGUUCGAG----------CGGAAGg-UAGUGcCGGG- -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 53718 | 0.69 | 0.569105 |
Target: 5'- cGUCGuuCUUgGCC-UCCGUCugGGCCUc -3' miRNA: 3'- -CAGUucGAG-CGGaAGGUAGugCCGGG- -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 53284 | 0.71 | 0.456666 |
Target: 5'- --gGAGCUCGUagucgUCCAaugUCGCGGCCa -3' miRNA: 3'- cagUUCGAGCGga---AGGU---AGUGCCGGg -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 52603 | 0.67 | 0.70828 |
Target: 5'- gGUCGAaCUCGCCgUCUAggCAC-GCCCa -3' miRNA: 3'- -CAGUUcGAGCGGaAGGUa-GUGcCGGG- -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 51326 | 0.68 | 0.676432 |
Target: 5'- cUCGGGCUUGagaaucUCCAUgACGGCCg -3' miRNA: 3'- cAGUUCGAGCgga---AGGUAgUGCCGGg -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 47119 | 0.7 | 0.547966 |
Target: 5'- gGUCGGGCUCGUCgguggggaUgGUCAgGGCCUg -3' miRNA: 3'- -CAGUUCGAGCGGaa------GgUAGUgCCGGG- -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 44901 | 0.66 | 0.749694 |
Target: 5'- uGUCGuaGGuCUUGCCcaccUCCAggGCGGUCCa -3' miRNA: 3'- -CAGU--UC-GAGCGGa---AGGUagUGCCGGG- -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 43443 | 0.73 | 0.374179 |
Target: 5'- gGUUGAG-UCGUCauugUCCAUCACGGUCCc -3' miRNA: 3'- -CAGUUCgAGCGGa---AGGUAGUGCCGGG- -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 41191 | 0.66 | 0.739485 |
Target: 5'- uGUCAAGCUgCGCCUgcguaUCCAgucgauuacgUACGuGCuCCa -3' miRNA: 3'- -CAGUUCGA-GCGGA-----AGGUa---------GUGC-CG-GG- -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 41015 | 0.77 | 0.20179 |
Target: 5'- -gUggGCUUGCCaUCCAUCGCGGCa- -3' miRNA: 3'- caGuuCGAGCGGaAGGUAGUGCCGgg -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 40267 | 0.66 | 0.779589 |
Target: 5'- -gCGGGUcuaucucaUCGCCUcgaUCUgcggcGUCGCGGCCUg -3' miRNA: 3'- caGUUCG--------AGCGGA---AGG-----UAGUGCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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