miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18435 3' -55.7 NC_004681.1 + 39097 0.69 0.569105
Target:  5'- cGUCGAcGUUgaCGCCUUCC-UCGuCGGCCa -3'
miRNA:   3'- -CAGUU-CGA--GCGGAAGGuAGU-GCCGGg -5'
18435 3' -55.7 NC_004681.1 + 38534 0.73 0.349016
Target:  5'- uGUCGuucCUCGCucuCUUCC-UCGCGGCCCu -3'
miRNA:   3'- -CAGUuc-GAGCG---GAAGGuAGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 36545 0.69 0.601164
Target:  5'- uUCAAGCucuUCGCCggUUC-UCACaGCCCg -3'
miRNA:   3'- cAGUUCG---AGCGGa-AGGuAGUGcCGGG- -5'
18435 3' -55.7 NC_004681.1 + 34650 0.66 0.769757
Target:  5'- cGUUguuGUUUGCCcagUCCcUCAUGGCCUg -3'
miRNA:   3'- -CAGuu-CGAGCGGa--AGGuAGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 32156 0.7 0.516748
Target:  5'- cUCGAGgaCGCCUUCCuugCGCugcuuGCCCa -3'
miRNA:   3'- cAGUUCgaGCGGAAGGua-GUGc----CGGG- -5'
18435 3' -55.7 NC_004681.1 + 30818 0.66 0.739485
Target:  5'- cGUCGAGCUCGCC--CCAcaugugggaguUCGCaccgccaccagGGCCg -3'
miRNA:   3'- -CAGUUCGAGCGGaaGGU-----------AGUG-----------CCGGg -5'
18435 3' -55.7 NC_004681.1 + 30676 1.11 0.000915
Target:  5'- gGUCAAGCUCGCCUUCCAUCACGGCCCu -3'
miRNA:   3'- -CAGUUCGAGCGGAAGGUAGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 29818 0.68 0.64422
Target:  5'- --gGAGCUCGgCaUCCAaCGCGGCgCg -3'
miRNA:   3'- cagUUCGAGCgGaAGGUaGUGCCGgG- -5'
18435 3' -55.7 NC_004681.1 + 26318 0.68 0.64422
Target:  5'- -gCGGGCaUCGCCg-CCGUgGCGGgCCa -3'
miRNA:   3'- caGUUCG-AGCGGaaGGUAgUGCCgGG- -5'
18435 3' -55.7 NC_004681.1 + 23950 0.68 0.622676
Target:  5'- cGUCAGGC-CGCUgaUCCAgCugGGCUg -3'
miRNA:   3'- -CAGUUCGaGCGGa-AGGUaGugCCGGg -5'
18435 3' -55.7 NC_004681.1 + 23666 0.7 0.537488
Target:  5'- aUCGAGCUgGCC-UCC--UACGcGCCCg -3'
miRNA:   3'- cAGUUCGAgCGGaAGGuaGUGC-CGGG- -5'
18435 3' -55.7 NC_004681.1 + 22910 0.68 0.633448
Target:  5'- -gCGGGgUCGCCccggcgaugCCGUaguaGCGGCCCa -3'
miRNA:   3'- caGUUCgAGCGGaa-------GGUAg---UGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 22573 0.67 0.687102
Target:  5'- gGUCuGGgUCGCCagCCGcaUCaACGGCCUg -3'
miRNA:   3'- -CAGuUCgAGCGGaaGGU--AG-UGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 19728 0.66 0.753746
Target:  5'- -cCAGGCUUGCCcacccucgCCGUCaucgaccacgccgcaGCGcGCCCa -3'
miRNA:   3'- caGUUCGAGCGGaa------GGUAG---------------UGC-CGGG- -5'
18435 3' -55.7 NC_004681.1 + 18571 0.67 0.687102
Target:  5'- aUC-AGCUgGCCa-CCGaacuUCAUGGCCCg -3'
miRNA:   3'- cAGuUCGAgCGGaaGGU----AGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 17357 0.67 0.708281
Target:  5'- cUCAAGguCUCGCCgacugcUCCAgCGCGGUCg -3'
miRNA:   3'- cAGUUC--GAGCGGa-----AGGUaGUGCCGGg -5'
18435 3' -55.7 NC_004681.1 + 16727 0.79 0.167738
Target:  5'- -cCGGGCUgaugccCGCCgccUCCAUCGCGGCCUg -3'
miRNA:   3'- caGUUCGA------GCGGa--AGGUAGUGCCGGG- -5'
18435 3' -55.7 NC_004681.1 + 16416 0.7 0.516748
Target:  5'- ----uGCUCGgCUUCCGUCGaucCGGCCg -3'
miRNA:   3'- caguuCGAGCgGAAGGUAGU---GCCGGg -5'
18435 3' -55.7 NC_004681.1 + 14547 0.69 0.611912
Target:  5'- gGUC-GGCaUCGCCgccaccgCCAcCACGGCCg -3'
miRNA:   3'- -CAGuUCG-AGCGGaa-----GGUaGUGCCGGg -5'
18435 3' -55.7 NC_004681.1 + 13536 0.73 0.365655
Target:  5'- uUCAucGGCUCGCCgUUCuCAucgaacagcugcUCACGGUCCa -3'
miRNA:   3'- cAGU--UCGAGCGG-AAG-GU------------AGUGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.