Results 41 - 49 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 18435 | 3' | -55.7 | NC_004681.1 | + | 13255 | 0.74 | 0.3409 |
|
Target: 5'- cGUCAAGCUCGCCgaauUCCG-CGuccaGGCCa -3' miRNA: 3'- -CAGUUCGAGCGGa---AGGUaGUg---CCGGg -5' |
|||||||
| 18435 | 3' | -55.7 | NC_004681.1 | + | 12525 | 0.69 | 0.569105 |
|
Target: 5'- cGUCAc-UUCGCCguccucgUCCGUCAcCGGCUCa -3' miRNA: 3'- -CAGUucGAGCGGa------AGGUAGU-GCCGGG- -5' |
|||||||
| 18435 | 3' | -55.7 | NC_004681.1 | + | 10848 | 0.67 | 0.718768 |
|
Target: 5'- aUgGAGCUUGCCcuugUCCcagugGUCGCGgacGCCCa -3' miRNA: 3'- cAgUUCGAGCGGa---AGG-----UAGUGC---CGGG- -5' |
|||||||
| 18435 | 3' | -55.7 | NC_004681.1 | + | 8629 | 0.74 | 0.316618 |
|
Target: 5'- -aCGAGCUgaGCCUcgcggaccugauuUCC-UCGCGGCCCg -3' miRNA: 3'- caGUUCGAg-CGGA-------------AGGuAGUGCCGGG- -5' |
|||||||
| 18435 | 3' | -55.7 | NC_004681.1 | + | 7690 | 0.66 | 0.739485 |
|
Target: 5'- aGUCGcGggCGUaggugCCAUCACGGCCUc -3' miRNA: 3'- -CAGUuCgaGCGgaa--GGUAGUGCCGGG- -5' |
|||||||
| 18435 | 3' | -55.7 | NC_004681.1 | + | 6921 | 0.74 | 0.325082 |
|
Target: 5'- uUCAGGCU-GUCg-CCGUCACGGUCCa -3' miRNA: 3'- cAGUUCGAgCGGaaGGUAGUGCCGGG- -5' |
|||||||
| 18435 | 3' | -55.7 | NC_004681.1 | + | 3641 | 0.71 | 0.466428 |
|
Target: 5'- -gCAGGCcgcccUCGCCUUCgaCGUCGCcGCCCa -3' miRNA: 3'- caGUUCG-----AGCGGAAG--GUAGUGcCGGG- -5' |
|||||||
| 18435 | 3' | -55.7 | NC_004681.1 | + | 3137 | 0.68 | 0.633449 |
|
Target: 5'- -cCAgcGGCUCGCCcUCCucCAgGGCCUg -3' miRNA: 3'- caGU--UCGAGCGGaAGGuaGUgCCGGG- -5' |
|||||||
| 18435 | 3' | -55.7 | NC_004681.1 | + | 503 | 0.72 | 0.428061 |
|
Target: 5'- cGUCAAGCUgGaCCcggCCAUCuuccGCGGCCg -3' miRNA: 3'- -CAGUUCGAgC-GGaa-GGUAG----UGCCGGg -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home