Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18435 | 3' | -55.7 | NC_004681.1 | + | 66897 | 0.66 | 0.783482 |
Target: 5'- cGUCAAGUcuggcgagcuguccaUCGUCgucguugacUCUGUgGCGGCCCu -3' miRNA: 3'- -CAGUUCG---------------AGCGGa--------AGGUAgUGCCGGG- -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 64679 | 0.68 | 0.64422 |
Target: 5'- -cCAAGCUgGgCCUgacauaCAUCGCaGGCCCc -3' miRNA: 3'- caGUUCGAgC-GGAag----GUAGUG-CCGGG- -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 54998 | 0.68 | 0.676432 |
Target: 5'- -gCAAGCUCggccugaaguGCCUUCagGUCGC-GCCCg -3' miRNA: 3'- caGUUCGAG----------CGGAAGg-UAGUGcCGGG- -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 22573 | 0.67 | 0.687102 |
Target: 5'- gGUCuGGgUCGCCagCCGcaUCaACGGCCUg -3' miRNA: 3'- -CAGuUCgAGCGGaaGGU--AG-UGCCGGG- -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 17357 | 0.67 | 0.708281 |
Target: 5'- cUCAAGguCUCGCCgacugcUCCAgCGCGGUCg -3' miRNA: 3'- cAGUUC--GAGCGGa-----AGGUaGUGCCGGg -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 71634 | 0.66 | 0.739485 |
Target: 5'- -aCcGGCUCagaGCCUUCC-UCGCGGUaguCCa -3' miRNA: 3'- caGuUCGAG---CGGAAGGuAGUGCCG---GG- -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 41191 | 0.66 | 0.739485 |
Target: 5'- uGUCAAGCUgCGCCUgcguaUCCAgucgauuacgUACGuGCuCCa -3' miRNA: 3'- -CAGUUCGA-GCGGA-----AGGUa---------GUGC-CG-GG- -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 68901 | 0.66 | 0.759788 |
Target: 5'- aUCGAGg-CGCUgaCCAucgUCACGGCCg -3' miRNA: 3'- cAGUUCgaGCGGaaGGU---AGUGCCGGg -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 34650 | 0.66 | 0.769757 |
Target: 5'- cGUUguuGUUUGCCcagUCCcUCAUGGCCUg -3' miRNA: 3'- -CAGuu-CGAGCGGa--AGGuAGUGCCGGG- -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 29818 | 0.68 | 0.64422 |
Target: 5'- --gGAGCUCGgCaUCCAaCGCGGCgCg -3' miRNA: 3'- cagUUCGAGCgGaAGGUaGUGCCGgG- -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 3137 | 0.68 | 0.633449 |
Target: 5'- -cCAgcGGCUCGCCcUCCucCAgGGCCUg -3' miRNA: 3'- caGU--UCGAGCGGaAGGuaGUgCCGGG- -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 14547 | 0.69 | 0.611912 |
Target: 5'- gGUC-GGCaUCGCCgccaccgCCAcCACGGCCg -3' miRNA: 3'- -CAGuUCG-AGCGGaa-----GGUaGUGCCGGg -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 41015 | 0.77 | 0.20179 |
Target: 5'- -gUggGCUUGCCaUCCAUCGCGGCa- -3' miRNA: 3'- caGuuCGAGCGGaAGGUAGUGCCGgg -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 8629 | 0.74 | 0.316618 |
Target: 5'- -aCGAGCUgaGCCUcgcggaccugauuUCC-UCGCGGCCCg -3' miRNA: 3'- caGUUCGAg-CGGA-------------AGGuAGUGCCGGG- -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 13255 | 0.74 | 0.3409 |
Target: 5'- cGUCAAGCUCGCCgaauUCCG-CGuccaGGCCa -3' miRNA: 3'- -CAGUUCGAGCGGa---AGGUaGUg---CCGGg -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 43443 | 0.73 | 0.374179 |
Target: 5'- gGUUGAG-UCGUCauugUCCAUCACGGUCCc -3' miRNA: 3'- -CAGUUCgAGCGGa---AGGUAGUGCCGGG- -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 503 | 0.72 | 0.428061 |
Target: 5'- cGUCAAGCUgGaCCcggCCAUCuuccGCGGCCg -3' miRNA: 3'- -CAGUUCGAgC-GGaa-GGUAG----UGCCGGg -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 3641 | 0.71 | 0.466428 |
Target: 5'- -gCAGGCcgcccUCGCCUUCgaCGUCGCcGCCCa -3' miRNA: 3'- caGUUCG-----AGCGGAAG--GUAGUGcCGGG- -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 23666 | 0.7 | 0.537488 |
Target: 5'- aUCGAGCUgGCC-UCC--UACGcGCCCg -3' miRNA: 3'- cAGUUCGAgCGGaAGGuaGUGC-CGGG- -5' |
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18435 | 3' | -55.7 | NC_004681.1 | + | 36545 | 0.69 | 0.601164 |
Target: 5'- uUCAAGCucuUCGCCggUUC-UCACaGCCCg -3' miRNA: 3'- cAGUUCG---AGCGGa-AGGuAGUGcCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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